Name: Halobacterium salinarum R1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5911

Type strain:

Species: Halobacterium salinarum

Strain Designation: R1

Culture col. no.: DSM 671, CCUG 24034, JCM 9409, ATCC 29341, NCIMB 2080

Strain history: NCIMB 2080 <-- ATCC 29341 <-- L. I. Hochstein R-1 <-- L. Briggs.

NCBI tax ID(s): 478009 (strain), 2242 (species)

SI-ID 92941

ATCC 29341, CCUG 24034, DSM 671, JCM 9409, NCIMB 2080, CGMCC 1.2368

Other strains from Halobacterium salinarum

H. salinarum 91-R6, DSM 3754, ATCC 33171, JCM ... (type strain)
H. salinarum 1, DSM 668, ATCC 19700
H. salinarum 63-R2, DSM 669, ATCC 33170, NRC ...
H. salinarum DSM 670, JCM 20854, ATCC 43214, ...
H. salinarum DS21, GRB, DSM 22414
H. salinarum ST033385(HKI),
H. salinarum GRB-mut326-P577, DSM 21899, MUT ...
H. salinarum HPC1-2, BCC 24372, JCM 14661, PCU ...
H. salinarum JCM 10927
H. salinarum JCM 20370, IAM 12046
H. salinarum JCM 9118, CCM 2148
H. salinarum JCM 9119, CCM 2088
H. salinarum JCM 9120, CCM 2090
H. salinarum JCM 9121, CCM 2084

Section

Halobacterium salinarum R1 is an aerobe, mesophilic, Gram-negative archaeon of the family Halobacteriaceae.

Gram-negative
aerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halobacterium*
	Species	**Halobacterium salinarum**
	Full Scientific Name (LPSN)	Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980)

	Synonym	"Serratia* cutirubra"*
	Synonym	Halobacterium cutirubrum
	Synonym	Halobacterium halobium
	Synonym	"Bacterium* halobium"*
	Synonym	Halobacterium salinarium
	Synonym	Halobacterium piscisalsi
	Synonym	"Pseudomonas* salinaria"*
	Synonym	"Halobacter* salinaria"*
	Synonym	"Halobacter* cutirubrum"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.982

[Ref.: #47906]

Incubation period

4 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #354]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #354]

Culture medium growth

[Ref.: #354]

Culture medium link

Medium recipe at MediaDive

[Ref.: #354]

Culture medium composition

expand / minimize

[Ref.: #354]

Culture medium

HALOBACTERIUM MEDIUM (DSMZ Medium 97)

[Ref.: #354]

Culture medium growth

[Ref.: #354]

Culture medium link

Medium recipe at MediaDive

[Ref.: #354]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #354]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #354]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #47906]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.965

[Ref.: #67770]

Observation

quinones: MK-8, MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence M11583 (>99% sequence identity) for Halobacterium salinarum from Microbeatlas

Aquatic Samples	26
Soil Samples	5
Animal Samples	2
Plant Samples
Total Samples	33

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #354]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halobacterium halobium 16S rRNA gene, complete cds	M11583	1473	ENA	2242 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halobacterium salinarum R1	478009.20	complete	PATRIC	478009 tax ID	*
[Ref.: #66792]	Halobacterium salinarum R1, DSM 671	641522631	complete	JGI IMG/M	478009 tax ID	*
[Ref.: #66792]	Halobacterium salinarum R1, DSM 671	2596583691	draft	JGI IMG/M	478009 tax ID	*
[Ref.: #66792]	Halobacterium salinarum R1 strain DSM 671 = R1	478009.35	plasmid	PATRIC	478009 tax ID	*
[Ref.: #66792]	Halobacterium salinarum R1 strain DSM 671 = R1	478009.36	plasmid	PATRIC	478009 tax ID	*
[Ref.: #66792]	Halobacterium salinarum R1 strain DSM 671 = R1	478009.38	plasmid	PATRIC	478009 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halobacterium salinarum R1 DSM 671 = R1 NCBI: GCA_000069025.1
[Ref.: #69481]	spore-forming	no	86	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halobacterium salinarum R1 DSM 671 = R1 NCBI: GCA_000069025.1
[Ref.: #69480]	motile	no	79.09	no
[Ref.: #69480]	flagellated	no	95.658	no
[Ref.: #69480]	gram-positive	no	97.349	no
[Ref.: #69480]	anaerobic	no	94.15	yes
[Ref.: #69480]	aerobic	yes	73.993	no
[Ref.: #69480]	halophile	yes	81.765	no
[Ref.: #69480]	spore-forming	no	93.576	no
[Ref.: #69480]	thermophile	no	91.852	yes
[Ref.: #69480]	glucose-util	yes	86.591	no
[Ref.: #69480]	glucose-ferment	no	79.141	no

Availability in culture collections External links

[Ref.: #354]

Culture collection no.

DSM 671, CCUG 24034, JCM 9409, ATCC 29341, NCIMB 2080

[Ref.: #75391]

SI-ID 92941

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Analysis of the cytosolic proteome of Halobacterium salinarum and its implication for genome annotation.	Tebbe A, Klein C, Bisle B, Siedler F, Scheffer B, Garcia-Rizo C, Wolfertz J, Hickmann V, Pfeiffer F, Oesterhelt D	Proteomics	10.1002/pmic.200400910	2005	*

References

#354	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 671

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#47906 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 24034

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75391

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92941.1 )

* These data were automatically processed and therefore are not curated

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Halobacterium salinarum R1 DSM 671 = R1

Halobacterium salinarum R1 DSM 671 = R1

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