Name: Halobacterium salinarum 91-R6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5912

Type strain:

Species: Halobacterium salinarum

Strain Designation: 91-R6

Culture col. no.: DSM 3754, ATCC 33171, JCM 8978, NCMB 764, NRC 34002, CGMCC 1.3519, CIP 104033, IAM 13166, NBRC 102687, NCIMB 764, NCMB 766, VKM B-1769

Strain history: NCIMB 764 <-- N. E. Gibbons <-- A. G. Lochhead.

NCBI tax ID(s): 2597657 (strain), 2242 (species)

Other strains from Halobacterium salinarum

H. salinarum 1, DSM 668, ATCC 19700
H. salinarum 63-R2, DSM 669, ATCC 33170, NRC ...
H. salinarum DSM 670, JCM 20854, ATCC 43214, ...
H. salinarum R1, DSM 671, CCUG 24034, JCM 9409, ...
H. salinarum DS21, GRB, DSM 22414
H. salinarum ST033385(HKI),
H. salinarum GRB-mut326-P577, DSM 21899, MUT ...
H. salinarum HPC1-2, BCC 24372, JCM 14661, PCU ...
H. salinarum JCM 10927
H. salinarum JCM 20370, IAM 12046
H. salinarum JCM 9118, CCM 2148
H. salinarum JCM 9119, CCM 2088
H. salinarum JCM 9120, CCM 2090
H. salinarum JCM 9121, CCM 2084

Section

Halobacterium salinarum 91-R6 is a mesophilic archaeon that was isolated from salted cow hide.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	"Euryarchaeota"
	Class	Halobacteria
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halobacterium*
	Species	**Halobacterium salinarum**
	Full Scientific Name (PNU)	Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980)

	Synonym	"Pseudomonas* salinaria"*
	Synonym	"Halobacter* salinaria"*
	Synonym	"Halobacter* cutirubrum"*
	Synonym	Halobacterium cutirubrum
	Synonym	Halobacterium halobium
	Synonym	"Bacterium* halobium"*
	Synonym	Halobacterium salinarium
	Synonym	Halobacterium piscisalsi
	Synonym	"Serratia* cutirubra"*

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1340]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #1340]

Culture medium growth

[Ref.: #1340]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1340]

Culture medium composition

expand / minimize

[Ref.: #1340]

Culture medium

HALOBACTERIUM MEDIUM (DSMZ Medium 97)

[Ref.: #1340]

Culture medium growth

[Ref.: #1340]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1340]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1340]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #1340]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8, MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1340]	Sample type/isolated from	salted cow hide

[Ref.: #67770]	Sample type/isolated from	Salted cowhide
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Skin, Nail, Hair
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB663362 (>99% sequence identity) for Halobacterium salinarum from Microbeatlas

Aquatic Samples	26
Soil Samples	5
Animal Samples	2
Plant Samples
Total Samples	33

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1340]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halobacterium salinarum gene for 16S rRNA, complete sequence, strain: JCM 8978	AB663362	1473	ENA	2242 tax ID	*
[Ref.: #1340]	Halobacterium salinarum 16S rRNA gene, type strain DSM 3754T	AJ496185	1473	ENA	2597657 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halobacterium salinarum 91-R6	GCA_004799605	complete	GenBank	2242 tax ID	*
[Ref.: #66792]	Halobacterium salinarum DSM 3754	2597490337	draft	JGI IMG/M	2242 tax ID	*
[Ref.: #67770]	Halobacterium salinarum strain 91-R6 chromosome, complete genome	CP038631		ENA	2242 tax ID
[Ref.: #67770]	Halobacterium salinarum DSM 3754 DSM 3754	GCA_008124605	contig	GenBank	2597657 tax ID
[Ref.: #66792]	Corynebacterium diphtheriae bv. mitis GMR-D-25.18	GCA_017149595	contig	PATRIC	1806053 tax ID	*
[Ref.: #66792]	Proteus mirabilis PM1-9	GCA_023604555	scaffold	PATRIC	584 tax ID	*

[Ref.: #67770]

GC-content

66.4 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #1340]

Culture collection no.

DSM 3754, ATCC 33171, JCM 8978, NCMB 764, NRC 34002, CGMCC 1.3519, CIP 104033, IAM 13166, NBRC 102687, NCIMB 764, NCMB 766, VKM B-1769

[Ref.: #20218]

Associated Passport(s) in StrainInfo

108969, 108965, 184559, 151592, 108966

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halobacterium jilantaiense sp. nov., a halophilic archaeon isolated from a saline lake in Inner Mongolia, China.	Yang Y, Cui HL, Zhou PJ, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64437-0	2006	*
Phylogeny	Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand.	Yachai M, Tanasupawat S, Itoh T, Benjakul S, Visessanguan W, Valyasevi R	Int J Syst Evol Microbiol	10.1099/ijs.0.65592-0	2008	*
Phylogeny	Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957.	Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.036905-0	2011	*
Phylogeny	Haloferax chudinovii sp. nov., a halophilic archaeon from Permian potassium salt deposits.	Saralov AI, Baslerov RV, Kuznetsov BB	Extremophiles	10.1007/s00792-013-0534-8	2013	*
Phylogeny	Halobacterium litoreum sp. nov., isolated from a marine solar saltern.	Lu ZZ, Li Y, Zhou Y, Cui HL, Li ZR	Int J Syst Evol Microbiol	10.1099/ijsem.0.002259	2017	*
Genetics	The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1.	Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML	Microbiol Resour Announc	10.1128/MRA.00429-19	2019	*
Genetics	Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754(T) ) and the laboratory strains R1 and NRC-1.	Pfeiffer F, Losensky G, Marchfelder A, Habermann B, Dyall-Smith M	Microbiologyopen	10.1002/mbo3.974	2019	*
	Biofilm formation by haloarchaea.	Frols S, Dyall-Smith M, Pfeifer F	Environ Microbiol	10.1111/j.1462-2920.2012.02895.x	2012	*

References

#1340

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3754

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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