Name: Halobacterium salinarum 91-R6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5912

Type strain:

Species: Halobacterium salinarum

Strain Designation: 91-R6

Culture col. no.: DSM 3754, ATCC 33171, JCM 8978, NCMB 764, NRC 34002, CGMCC 1.3519, CIP 104033, IAM 13166, NBRC 102687, NCIMB 764, NCMB 766, VKM B-1769

Strain history: CIP <- 2016, DSMZ <- B.J. Tindall <- NRC <- N.E. Gibbons <- A.G. Lochhead: strain 91-R6

NCBI tax ID(s): 2597657 (strain), 2242 (species)

SI-ID 40375

ATCC 33171, CIP 104033, DSM 3754, NCIMB 764, NCMB 764, JCM 8978, IAM 13166, NCMB 766, VKM B-1769, CGMCC 1.1958, NBRC 102687, VTT E-103154

Special Collections

Other strains from Halobacterium salinarum

Section

Halobacterium salinarum 91-R6 is a mesophilic, Gram-negative, rod-shaped archaeon that was isolated from salted cow hide.

Gram-negative
rod-shaped
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halobacterium*
	Species	**Halobacterium salinarum**
	Full Scientific Name (LPSN)	Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980)

	Synonym	Halobacterium piscisalsi
	Synonym	"Halobacter* cutirubrum"*
	Synonym	"Serratia* cutirubra"*
	Synonym	"Pseudomonas* salinaria"*
	Synonym	"Halobacter* salinaria"*
	Synonym	Halobacterium cutirubrum
	Synonym	Halobacterium halobium
	Synonym	"Bacterium* halobium"*
	Synonym	Halobacterium salinarium

Information on morphological and physiological properties Morphology

[Ref.: #122383]	Gram stain	negative

[Ref.: #122383]	Cell shape	rod-shaped

[Ref.: #122383]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.833

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1340]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #1340]

Culture medium growth

[Ref.: #1340]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1340]

Culture medium composition

expand / minimize

[Ref.: #1340]

Culture medium

HALOBACTERIUM MEDIUM (DSMZ Medium 97)

[Ref.: #1340]

Culture medium growth

[Ref.: #1340]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1340]

Culture medium composition

expand / minimize

[Ref.: #122383]

Culture medium

CIP Medium 330

[Ref.: #122383]

Culture medium growth

[Ref.: #122383]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122383]

Culture medium

CIP Medium 204

[Ref.: #122383]

Culture medium growth

[Ref.: #122383]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #1340]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8, MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1340]	Sample type/isolated from	salted cow hide
[Ref.: #1340]	Country	Canada
[Ref.: #1340]	Country ISO 3 Code	CAN
[Ref.: #1340]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Salted cowhide

[Ref.: #122383]	Sample type/isolated from	Salted cow hide
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Skin, Nail, Hair
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB663362 (>99% sequence identity) for Halobacterium salinarum from Microbeatlas

Aquatic Samples	26
Soil Samples	5
Animal Samples	2
Plant Samples
Total Samples	33

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1340]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122383]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1340]	Halobacterium salinarum 16S rRNA gene, type strain DSM 3754T	AJ496185	1473	GenBank ENA	2597657 tax ID
[Ref.: #20218]	Halobacterium salinarum gene for 16S rRNA, complete sequence, strain: JCM 8978	AB663362	1473	GenBank ENA	2242 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halobacterium salinarum DSM 3754	GCA_008124605	contig	GenBank ENA	2597657 tax ID
[Ref.: #66792]	Halobacterium salinarum 91-R6	GCA_004799605	complete	GenBank ENA	2242 tax ID	*
[Ref.: #66792]	Halobacterium salinarum DSM 3754	2597490337	draft	JGI IMG/M	2242 tax ID	*
[Ref.: #66792]	Halobacterium salinarum strain 91-R6	2242.21	complete	PATRIC	2242 tax ID	*
[Ref.: #66792]	Halobacterium salinarum DSM 3754	2597657.4	wgs	PATRIC	2597657 tax ID	*

[Ref.: #67770]

GC-content

66.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halobacterium salinarum 91-R6 NCBI: GCA_004799605.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	77.711	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	84.94	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.535	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.947	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	79.069	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.833	no

Availability in culture collections External links

[Ref.: #1340]

Culture collection no.

DSM 3754, ATCC 33171, JCM 8978, NCMB 764, NRC 34002, CGMCC 1.3519, CIP 104033, IAM 13166, NBRC 102687, NCIMB 764, NCMB 766, VKM B-1769

[Ref.: #75392]	SI-ID 40375	*
[Ref.: #75393]	SI-ID 312097	*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754(T) ) and the laboratory strains R1 and NRC-1.	Pfeiffer F, Losensky G, Marchfelder A, Habermann B, Dyall-Smith M	Microbiologyopen	10.1002/mbo3.974	2019	*
Genetics	The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1.	Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML	Microbiol Resour Announc	10.1128/MRA.00429-19	2019	*
Phylogeny	Halobacterium litoreum sp. nov., isolated from a marine solar saltern.	Lu ZZ, Li Y, Zhou Y, Cui HL, Li ZR	Int J Syst Evol Microbiol	10.1099/ijsem.0.002259	2017	*
Phylogeny	Haloferax chudinovii sp. nov., a halophilic archaeon from Permian potassium salt deposits.	Saralov AI, Baslerov RV, Kuznetsov BB	Extremophiles	10.1007/s00792-013-0534-8	2013	*
Phylogeny	Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957.	Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.036905-0	2011	*
Phylogeny	Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand.	Yachai M, Tanasupawat S, Itoh T, Benjakul S, Visessanguan W, Valyasevi R	Int J Syst Evol Microbiol	10.1099/ijs.0.65592-0	2008	*
Phylogeny	Halobacterium jilantaiense sp. nov., a halophilic archaeon isolated from a saline lake in Inner Mongolia, China.	Yang Y, Cui HL, Zhou PJ, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64437-0	2006	*
	Biofilm formation by haloarchaea.	Frols S, Dyall-Smith M, Pfeifer F	Environ Microbiol	10.1111/j.1462-2920.2012.02895.x	2012	*

References

#1340

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3754

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75392

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40375.1 )

#75393

#122383 Collection of Institut Pasteur ; Curators of the CIP; CIP 104033
* These data were automatically processed and therefore are not curated

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