Name: Halobacterium salinarum HPC1-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134335

Type strain:

Species: Halobacterium salinarum

Strain Designation: HPC1-2

Culture col. no.: BCC 24372, JCM 14661, PCU 302

Strain history: W. Visessanguan HPC1-2.

NCBI tax ID(s): 2242 (species)

Other strains from Halobacterium salinarum

H. salinarum 91-R6, DSM 3754, ATCC 33171, JCM ... (type strain)
H. salinarum 1, DSM 668, ATCC 19700
H. salinarum 63-R2, DSM 669, ATCC 33170, NRC ...
H. salinarum DSM 670, JCM 20854, ATCC 43214, ...
H. salinarum R1, DSM 671, CCUG 24034, JCM 9409, ...
H. salinarum DS21, GRB, DSM 22414
H. salinarum ST033385(HKI),
H. salinarum GRB-mut326-P577, DSM 21899, MUT ...
H. salinarum JCM 10927
H. salinarum JCM 20370, IAM 12046
H. salinarum JCM 9118, CCM 2148
H. salinarum JCM 9119, CCM 2088
H. salinarum JCM 9120, CCM 2090
H. salinarum JCM 9121, CCM 2084

Section

Halobacterium salinarum HPC1-2 is a facultative anaerobe, Gram-negative, motile archaeon that was isolated from salt fermented fish.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halobacterium*
	Species	**Halobacterium salinarum**
	Full Scientific Name (LPSN)	Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980)

	Synonym	"Serratia* cutirubra"*
	Synonym	Halobacterium cutirubrum
	Synonym	Halobacterium halobium
	Synonym	"Bacterium* halobium"*
	Synonym	Halobacterium salinarium
	Synonym	Halobacterium piscisalsi
	Synonym	"Pseudomonas* salinaria"*
	Synonym	"Halobacter* salinaria"*
	Synonym	"Halobacter* cutirubrum"*

Information on morphological and physiological properties Morphology

[Ref.: #32504]	Gram stain	negative

[Ref.: #32504]	Cell length	01-02 µm

[Ref.: #32504]	Cell width	0.5-1 µm

[Ref.: #32504]	Cell shape	rod-shaped

[Ref.: #32504]	Motility	yes

[Ref.: #32504]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32504]	growth	20-60 °C
[Ref.: #32504]	optimum	37-40 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #32504]			optimum	7-7.5
[Ref.: #32504]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32504]

Oxygen tolerance

facultative anaerobe

[Ref.: #32504]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32504]		NaCl		growth	15.08-24.94	%
[Ref.: #32504]		NaCl		optimum	19.72-24.94	%

[Ref.: #32504]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32504]	citrate ChEBI	+	carbon source
[Ref.: #32504]	glycerol ChEBI	+	carbon source
[Ref.: #32504]	lactose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32504]		catalase	+	1.11.1.6
[Ref.: #32504]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32504]	Sample type/isolated from	salt fermented fish

[Ref.: #67770]	Sample type/isolated from	Salt-fermented fish product (pla-ra) of Thailand
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Host	#Fishes	-
#Condition	#Saline	-
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB545861 (>99% sequence identity) for Halobacterium salinarum from Microbeatlas

Aquatic Samples	26
Soil Samples	5
Animal Samples	2
Plant Samples
Total Samples	33

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32504]	Halobacterium sp. HPC1-2 gene for 16S ribosomal RNA, partial sequence	AB285020	1375	GenBank	2242 tax ID
[Ref.: #67770]	Halobacterium piscisalsi gene for 16S ribosomal RNA, partial sequence, strain: JCM 14661	AB545861	1473	ENA	2242 tax ID

[Ref.: #32504]	GC-content	65.5 mol%
[Ref.: #67770]	GC-content	65.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #32504]

Culture collection no.

BCC 24372, JCM 14661, PCU 302

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957.	Minegishi H, Echigo A, Shimane Y, Kamekura M, Tanasupawat S, Visessanguan W, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.036905-0	2011	*
Phylogeny	Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand.	Yachai M, Tanasupawat S, Itoh T, Benjakul S, Visessanguan W, Valyasevi R	Int J Syst Evol Microbiol	10.1099/ijs.0.65592-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32504

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28724 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28724

IJSEM 2136 2008 ( DOI 10.1099/ijs.0.65592-0 , PubMed 18768619 )

* These data were automatically processed and therefore are not curated

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