Name: Francisella noatunensis 2005/50/F292-6C
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5750

Type strain:

Species: Francisella noatunensis

Strain Designation: 2005/50/F292-6C

Culture col. no.: DSM 23596, LMG 23800, NCIMB 14265

Strain history: <- LMG <- J. Mikalsen; 2005/50/F292-6C

NCBI tax ID(s): 657445 (species)

SI-ID 309533

LMG 23800, NCIMB 14265, DSM 23596

Special Collections

DSMZ

Other strains from Francisella noatunensis

Section

Francisella noatunensis 2005/50/F292-6C is an animal pathogen that was isolated from farmed atlantic cod Gadus morhua with granulomatous disease.

animal pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Francisellaceae*
	Genus	*Francisella*
	Species	**Francisella noatunensis**
	Full Scientific Name (LPSN)	Francisella noatunensis (Mikalsen et al. 2007) Ottem et al. 2009

	Synonym	Francisella piscicida
	Synonym	Francisella philomiragia subsp. noatunensis

Information on morphological and physiological properties Morphology

[Ref.: #17296]	Type of hemolysis	alpha/beta
[Ref.: #17296]	Hemolysis ability	1

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17296]

Culture medium

COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)

[Ref.: #17296]

Culture medium growth

[Ref.: #17296]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17296]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17296]			growth	22 °C

Information on physiology and metabolism Physiology and metabolism

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #17296]		catalase	-	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17296]	Sample type/isolated from	farmed atlantic cod Gadus morhua with granulomatous disease
[Ref.: #17296]	Host species	Gadus morhua
[Ref.: #17296]	Geographic location (country and/or sea, region)	Hordaland
[Ref.: #17296]	Country	Norway
[Ref.: #17296]	Country ISO 3 Code	NOR
[Ref.: #17296]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	-
#Infection	#Inflammation	-
#Host	#Fishes	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ295795 (>99% sequence identity) for Francisella from Microbeatlas

Aquatic Samples	6973
Soil Samples	181
Animal Samples	762
Plant Samples	39
Total Samples	7955

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17296]	Pathogenicity (animal)	yes
[Ref.: #17296]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17296]	Francisella sp. 2005/50/F292-6C 16S ribosomal RNA gene, partial sequence	DQ295795	1416	GenBank ENA	360196 tax ID

Availability in culture collections External links

[Ref.: #17296]

Culture collection no.

DSM 23596, LMG 23800, NCIMB 14265

[Ref.: #75229]

SI-ID 309533

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Francisella halioticida sp. nov., a pathogen of farmed giant abalone (Haliotis gigantea) in Japan.	Brevik OJ, Ottem KF, Kamaishi T, Watanabe K, Nylund A	J Appl Microbiol	10.1111/j.1365-2672.2011.05133.x	2011	*
Phylogeny	Francisella asiatica sp. nov. isolated from farmed tilapia (Oreochromis sp.) and elevation of Francisella philomiragia subsp. noatunensis to species rank as Francisella noatunensis comb. nov., sp. nov.	Mikalsen J, Colquhoun DJ	Int J Syst Evol Microbiol	10.1099/ijs.0.002139-0	2009	*
	Monitoring the survival of fish-pathogenic Francisella in water microcosms.	Duodu S, Colquhoun D	FEMS Microbiol Ecol	10.1111/j.1574-6941.2010.00973.x	2010	*

References

#17296

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23596

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75229

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309533.1 )

* These data were automatically processed and therefore are not curated

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