Strain identifier
BacDive ID: 5750
Type strain: 
Species: Francisella noatunensis
Strain Designation: 2005/50/F292-6C
Strain history: <- LMG <- J. Mikalsen; 2005/50/F292-6C
NCBI tax ID(s): 657445 (species)
version 9 (current version)
General
@ref: 17296
BacDive-ID: 5750
DSM-Number: 23596
keywords: 16S sequence, Bacteria, animal pathogen
description: Francisella noatunensis 2005/50/F292-6C is an animal pathogen that was isolated from farmed atlantic cod Gadus morhua with granulomatous disease.
NCBI tax id
- NCBI tax id: 657445
- Matching level: species
strain history
- @ref: 17296
- history: <- LMG <- J. Mikalsen; 2005/50/F292-6C
doi: 10.13145/bacdive5750.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Beggiatoales
- family: Francisellaceae
- genus: Francisella
- species: Francisella noatunensis
- full scientific name: Francisella noatunensis (Mikalsen et al. 2007) Ottem et al. 2009
synonyms
@ref synonym 20215 Francisella piscicida 20215 Francisella philomiragia subsp. noatunensis
@ref: 17296
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Thiotrichales
family: Francisellaceae
genus: Francisella
species: Francisella noatunensis
full scientific name: Francisella noatunensis (Mikalsen et al. 2007) Ottem et al. 2009
strain designation: 2005/50/F292-6C
type strain: yes
Morphology
colony morphology
- @ref: 17296
- type of hemolysis: alpha/beta
- hemolysis ability: 1
Culture and growth conditions
culture medium
- @ref: 17296
- name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/429c
- composition: Name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c) Composition: Horse blood 40.0 g/l Sheep blood 40.0 g/l Glucose 10.0 g/l Cysteine 1.0 g/l Columbia agar base
culture temp
- @ref: 17296
- growth: positive
- type: growth
- temperature: 22
Physiology and metabolism
enzymes
- @ref: 17296
- value: catalase
- activity: -
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 17296
- sample type: farmed atlantic cod Gadus morhua with granulomatous disease
- host species: Gadus morhua
- geographic location: Hordaland
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Aquaculture |
| #Environmental | #Aquatic | |
| #Infection | #Inflammation | |
| #Host | #Fishes |
taxonmaps
- @ref: 69479
- File name: preview.99_1284.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_68;96_165;97_178;98_1014;99_1284&stattab=map
- Last taxonomy: Francisella
- 16S sequence: DQ295795
- Sequence Identity:
- Total samples: 7955
- soil counts: 181
- aquatic counts: 6973
- animal counts: 762
- plant counts: 39
Safety information
risk assessment
- @ref: 17296
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17296
- description: Francisella sp. 2005/50/F292-6C 16S ribosomal RNA gene, partial sequence
- accession: DQ295795
- length: 1416
- database: nuccore
- NCBI tax ID: 360196
External links
@ref: 17296
culture collection no.: DSM 23596, LMG 23800, NCIMB 14265
straininfo link
- @ref: 75229
- straininfo: 309533
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19783606 | Francisella asiatica sp. nov. isolated from farmed tilapia (Oreochromis sp.) and elevation of Francisella philomiragia subsp. noatunensis to species rank as Francisella noatunensis comb. nov., sp. nov. | Mikalsen J, Colquhoun DJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.002139-0 | 2009 | ||
| 20977492 | Monitoring the survival of fish-pathogenic Francisella in water microcosms. | Duodu S, Colquhoun D | FEMS Microbiol Ecol | 10.1111/j.1574-6941.2010.00973.x | 2010 | Animals, DNA, Bacterial/genetics, Environment, Fish Diseases/microbiology, Fishes/*microbiology, Francisella/genetics/*growth & development/pathogenicity, Fresh Water, Microbial Viability, Seawater, *Temperature, Virulence, *Water Microbiology | ||
| Phylogeny | 21883728 | Francisella halioticida sp. nov., a pathogen of farmed giant abalone (Haliotis gigantea) in Japan. | Brevik OJ, Ottem KF, Kamaishi T, Watanabe K, Nylund A | J Appl Microbiol | 10.1111/j.1365-2672.2011.05133.x | 2011 | Animals, Base Composition, DNA, Bacterial/genetics, Francisella/*classification/genetics/isolation & purification, Gastropoda/*microbiology, Japan, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Phenotype |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17296 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23596) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23596 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 75229 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309533.1 | StrainInfo: A central database for resolving microbial strain identifiers |