Name: Francisella orientalis Ehime-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5751

Type strain:

Species: Francisella orientalis

Strain Designation: Ehime-1

Culture col. no.: DSM 21254, LMG 24544

Strain history: <- K. F. Ottem; <- T. Kamaishi;

NCBI tax ID(s): 299583 (species)

SI-ID 363407

DSM 21254, LMG 24544

Special Collections

DSMZ

Section

Francisella orientalis Ehime-1 is an animal pathogen that was isolated from three-line grunt .

animal pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Francisellaceae*
	Genus	*Francisella*
	Species	**Francisella orientalis**
	Full Scientific Name (LPSN)	Francisella orientalis (Ottem et al. 2009) Ramirez-Paredes et al. 2020

Synonym

Francisella noatunensis subsp. orientalis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15593]

Culture medium

COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)

[Ref.: #15593]

Culture medium growth

[Ref.: #15593]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15593]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15593]			growth	25 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15593]	Sample type/isolated from	three-line grunt (Parapristipoma trilineatum)
[Ref.: #15593]	Host species	Parapristipoma trilineatum
[Ref.: #15593]	Country	Japan
[Ref.: #15593]	Country ISO 3 Code	JPN
[Ref.: #15593]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Fishes

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB194068 (>99% sequence identity) for Francisella from Microbeatlas

Aquatic Samples	2123
Soil Samples	29
Animal Samples	80
Plant Samples	2
Total Samples	2234

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15593]	Pathogenicity (animal)	yes
[Ref.: #15593]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15593]	Francisella sp. Ehime-1 gene for 16S rRNA, partial sequence	AB194068	1480	GenBank ENA	299583 tax ID

Availability in culture collections External links

[Ref.: #15593]

Culture collection no.

DSM 21254, LMG 24544

[Ref.: #75230]

SI-ID 363407

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Francisella noatunensis subsp. orientalis Ottem et al. 2009 as Francisella orientalis sp. nov., Francisella noatunensis subsp. chilensis subsp. nov. and emended description of Francisella noatunensis.	Ramirez-Paredes JG, Larsson P, Thompson KD, Penman DJ, Busse HJ, Ohrman C, Sjodin A, Soto E, Richards RH, Adams A, Colquhoun DJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004009	2020	*

References

#15593

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21254

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75230

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363407.1 )

* These data were automatically processed and therefore are not curated

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