Francisella hispaniensis (DSM 22475, CCUG 58020, FSC 454)

Name: Francisella hispaniensis (DSM 22475, CCUG 58020, FSC 454)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5752

Type strain

Strain Designation F62, FhSp1, FnSp1

Culture col. no. DSM 22475 CCUG 58020 FSC 454 F62 FhSp1 1 more

NCBI tax ID(s) 1088883 622488

Special Collections DSMZ CCUG

Links

Francisella hispaniensis F62 is an aerobe, mesophilic prokaryote that was isolated from blood of a patient suffering from severe septicaemia secondary to acute obstructive pyelonephritis.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404952

DSM 22475,CCUG 58020

@ref 20215

Last LPSN update 2025-12-16 09:48:09

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Beggiatoales

Family Francisellaceae

Genus Francisella

Species Francisella hispaniensis

Full scientific name Francisella hispaniensis Huber et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.5

Colony morphology

16358

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16358	COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)		Medium recipe at MediaDive	Name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c) Composition: Horse blood 40.0 g/l Sheep blood 40.0 g/l Glucose 10.0 g/l Cysteine 1.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16358	positive	growth	37	mesophilic
61556	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
61556	aerobe
125439	obligate aerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease
#Infection	#Patient
#Host Body Product	#Fluids

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
16358	blood of a patient suffering from severe septicaemia secondary to acute obstructive pyelonephritis	Spain	ESP	Europe
61556	Human blood,severe septicaemia	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence FN252413 (>99% sequence identity) for Francisella from Microbeatlas

Aquatic Samples	3089
Soil Samples	843
Animal Samples	1134
Plant Samples	145
Total Samples	5211

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16358	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM188523v1 assembly for Francisella hispaniensis FSC454 CCUG 58020	complete	GCA_001885235	2773858043	1088883	97.29
66792	Francisella hispaniensis FSC454, CCUG 58020	complete		2504756030	1088883	82.97
66792	FHIS001-SEQ-1-ASM-1 assembly for Francisella hispaniensis FSC454 CCUG 58020	contig	GCA_001608445	2744054722	1088883	59.76

Genome browser: GCA_001885235

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16358	Francisella sp. FSC454 16S rRNA gene, strain FSC454	FN252413	1474		1088883

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Francisella hispaniensis FSC454
PATRIC: 1088883.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.60	no
125439	gram_stain	BacteriaNetⓘ	negative	87.50	no
125439	motility	BacteriaNetⓘ	no	58.40	no
125439	spore_formation	BacteriaNetⓘ	no	87.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Francisella hispaniensis FSC454 CCUG 58020
NCBI: GCA_001885235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.50	no
125438	anaerobic	anaerobicⓘ	no	91.31	yes
125438	aerobic	aerobicⓘ	yes	58.40	yes
125438	spore-forming	spore-formingⓘ	no	89.51	no
125438	thermophilic	thermophileⓘ	no	95.36	yes
125438	flagellated	motile2+ⓘ	no	86.91	no

Literature

Title	Authors	Journal	DOI	Year
First Description of a Temperate Bacteriophage (vB_FhiM_KIRK) of Francisella hispaniensis Strain 3523.	Koppen K, Prensa GI, Rydzewski K, Tlapak H, Holland G, Heuner K.	Viruses	10.3390/v13020327	2021
Reorganized Genomic Taxonomy of Francisellaceae Enables Design of Robust Environmental PCR Assays for Detection of Francisella tularensis.	Ohrman C, Sahl JW, Sjodin A, Uneklint I, Ballard R, Karlsson L, McDonough RF, Sundell D, Soria K, Backman S, Chase K, Brindefalk B, Sozhamannan S, Vallesi A, Hagglund E, Ramirez-Paredes JG, Thelaus J, Colquhoun D, Myrtennas K, Birdsell D, Johansson A, Wagner DM, Forsman M.	Microorganisms	10.3390/microorganisms9010146	2021
Evaluation of Oxford Nanopore's MinION Sequencing Device for Microbial Whole Genome Sequencing Applications.	Tyler AD, Mataseje L, Urfano CJ, Schmidt L, Antonation KS, Mulvey MR, Corbett CR.	Sci Rep	10.1038/s41598-018-29334-5	2018
Comprehensive Laboratory Evaluation of a Specific Lateral Flow Assay for the Presumptive Identification of Francisella tularensis in Suspicious White Powders and Aerosol Samples.	Pillai SP, DePalma L, Prentice KW, Ramage JG, Chapman C, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Singh A, Pillai CA, Manickam G, Thirunavkkarasu N, Avila JR, Sharma S, Morse SA, Venkateswaran K, Anderson K, Hodge DR.	Health Secur	10.1089/hs.2019.0151	2020
Description of Francisella hispaniensis sp. nov., isolated from human blood, reclassification of Francisella novicida (Larson et al. 1955) Olsufiev et al. 1959 as Francisella tularensis subsp. novicida comb. nov. and emended description of the genus Francisella.	Huber B, Escudero R, Busse HJ, Seibold E, Scholz HC, Anda P, Kampfer P, Splettstoesser WD	Int J Syst Evol Microbiol	10.1099/ijs.0.015941-0	2009

References

#16358	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22475
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61556	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58020
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Francisella hispaniensis (DSM 22475, CCUG 58020, FSC 454)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001885235

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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