Name: Francisella noatunensis GM2212
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5749

Type strain:

Species: Francisella noatunensis

Strain Designation: GM2212

Culture col. no.: DSM 18777, CNCM I-3481, CNCM I-3511, LMG 24256

Strain history: <- K. F. Ottem; GM2212

NCBI tax ID(s): 657445 (species)

SI-ID 323963

DSM 18777, LMG 24256, LMG 24063

Special Collections

DSMZ

Other strains from Francisella noatunensis

Section

Francisella noatunensis GM2212 is an animal pathogen that was isolated from kidney of farmed Atlantic cod .

animal pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Francisellaceae*
	Genus	*Francisella*
	Species	**Francisella noatunensis**
	Full Scientific Name (LPSN)	Francisella noatunensis (Mikalsen et al. 2007) Ottem et al. 2009

	Synonym	Francisella piscicida
	Synonym	Francisella philomiragia subsp. noatunensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7692]

Culture medium

COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)

[Ref.: #7692]

Culture medium growth

[Ref.: #7692]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7692]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7692]			growth	23 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7692]	Sample type/isolated from	kidney of farmed Atlantic cod (Gadus morhua)
[Ref.: #7692]	Host species	Gadus morhua
[Ref.: #7692]	Geographic location (country and/or sea, region)	Rogaland County
[Ref.: #7692]	Country	Norway
[Ref.: #7692]	Country ISO 3 Code	NOR
[Ref.: #7692]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Urogenital tract	#Kidney

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ309246 (>99% sequence identity) for Francisella from Microbeatlas

Aquatic Samples	6973
Soil Samples	181
Animal Samples	762
Plant Samples	39
Total Samples	7955

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7692]	Pathogenicity (animal)	yes
[Ref.: #7692]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7692]	Francisella piscicida strain GM2212-2005 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	DQ309246	4796	GenBank ENA	657445 tax ID

Availability in culture collections External links

[Ref.: #7692]

Culture collection no.

DSM 18777, CNCM I-3481, CNCM I-3511, LMG 24256

[Ref.: #75228]

SI-ID 323963

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Multiple-locus, variable number of tandem repeat analysis (MLVA) of the fish-pathogen Francisella noatunensis.	Brevik OJ, Ottem KF, Nylund A	BMC Vet Res	10.1186/1746-6148-7-5	2011	*
Phylogeny	Description of Francisella hispaniensis sp. nov., isolated from human blood, reclassification of Francisella novicida (Larson et al. 1955) Olsufiev et al. 1959 as Francisella tularensis subsp. novicida comb. nov. and emended description of the genus Francisella.	Huber B, Escudero R, Busse HJ, Seibold E, Scholz HC, Anda P, Kampfer P, Splettstoesser WD	Int J Syst Evol Microbiol	10.1099/ijs.0.015941-0	2009	*
Phylogeny	Francisella asiatica sp. nov. isolated from farmed tilapia (Oreochromis sp.) and elevation of Francisella philomiragia subsp. noatunensis to species rank as Francisella noatunensis comb. nov., sp. nov.	Mikalsen J, Colquhoun DJ	Int J Syst Evol Microbiol	10.1099/ijs.0.002139-0	2009	*
Phylogeny	New species in the genus Francisella (Gammaproteobacteria; Francisellaceae); Francisella piscicida sp. nov. isolated from cod (Gadus morhua).	Ottem KF, Nylund A, Karlsbakk E, Friis-Moller A, Krossoy B, Knappskog D	Arch Microbiol	10.1007/s00203-007-0274-1	2007	*

References

#7692

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18777

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75228

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323963.1 )

* These data were automatically processed and therefore are not curated

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