Strain identifier

BacDive ID: 5749

Type strain: No

Species: Francisella noatunensis

Strain Designation: GM2212

Strain history: <- K. F. Ottem; GM2212

NCBI tax ID(s): 657445 (species)

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General

@ref: 7692

BacDive-ID: 5749

DSM-Number: 18777

keywords: 16S sequence, Bacteria, animal pathogen

description: Francisella noatunensis GM2212 is an animal pathogen that was isolated from kidney of farmed Atlantic cod .

NCBI tax id

  • NCBI tax id: 657445
  • Matching level: species

strain history

  • @ref: 7692
  • history: <- K. F. Ottem; GM2212

doi: 10.13145/bacdive5749.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Francisellaceae
  • genus: Francisella
  • species: Francisella noatunensis
  • full scientific name: Francisella noatunensis (Mikalsen et al. 2007) Ottem et al. 2009

  • synonyms

    @refsynonym
    20215Francisella piscicida
    20215Francisella philomiragia subsp. noatunensis

@ref: 7692

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Francisellaceae

genus: Francisella

species: Francisella noatunensis

full scientific name: Francisella noatunensis (Mikalsen et al. 2007) Ottem et al. 2009

strain designation: GM2212

type strain: no

Culture and growth conditions

culture medium

  • @ref: 7692
  • name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/429c
  • composition: Name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c) Composition: Horse blood 40.0 g/l Sheep blood 40.0 g/l Glucose 10.0 g/l Cysteine 1.0 g/l Columbia agar base

culture temp

  • @ref: 7692
  • growth: positive
  • type: growth
  • temperature: 23

Isolation, sampling and environmental information

isolation

  • @ref: 7692
  • sample type: kidney of farmed Atlantic cod (Gadus morhua)
  • host species: Gadus morhua
  • geographic location: Rogaland County
  • country: Norway
  • origin.country: NOR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Fishes
#Host Body-Site#Urogenital tract#Kidney

taxonmaps

  • @ref: 69479
  • File name: preview.99_1284.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_68;96_165;97_178;98_1014;99_1284&stattab=map
  • Last taxonomy: Francisella
  • 16S sequence: DQ309246
  • Sequence Identity:
  • Total samples: 7955
  • soil counts: 181
  • aquatic counts: 6973
  • animal counts: 762
  • plant counts: 39

Safety information

risk assessment

  • @ref: 7692
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7692
  • description: Francisella piscicida strain GM2212-2005 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
  • accession: DQ309246
  • length: 4796
  • database: nuccore
  • NCBI tax ID: 657445

External links

@ref: 7692

culture collection no.: DSM 18777, CNCM I-3481, CNCM I-3511, LMG 24256

straininfo link

  • @ref: 75228
  • straininfo: 323963

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17619856New species in the genus Francisella (Gammaproteobacteria; Francisellaceae); Francisella piscicida sp. nov. isolated from cod (Gadus morhua).Ottem KF, Nylund A, Karlsbakk E, Friis-Moller A, Krossoy B, Knappskog DArch Microbiol10.1007/s00203-007-0274-12007Animals, Bacterial Typing Techniques, Fatty Acids/analysis, Fish Diseases/*microbiology, Francisella/chemistry/*classification/genetics/*isolation & purification, Gadus morhua/*microbiology, Gram-Negative Bacterial Infections/*veterinary, Nucleic Acid Hybridization, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Species SpecificityTranscriptome
Phylogeny19783606Francisella asiatica sp. nov. isolated from farmed tilapia (Oreochromis sp.) and elevation of Francisella philomiragia subsp. noatunensis to species rank as Francisella noatunensis comb. nov., sp. nov.Mikalsen J, Colquhoun DJInt J Syst Evol Microbiol10.1099/ijs.0.002139-02009
Phylogeny19783615Description of Francisella hispaniensis sp. nov., isolated from human blood, reclassification of Francisella novicida (Larson et al. 1955) Olsufiev et al. 1959 as Francisella tularensis subsp. novicida comb. nov. and emended description of the genus Francisella.Huber B, Escudero R, Busse HJ, Seibold E, Scholz HC, Anda P, Kampfer P, Splettstoesser WDInt J Syst Evol Microbiol10.1099/ijs.0.015941-02009Blood/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Francisella/*classification/genetics/*isolation & purification/metabolism, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny21261955Multiple-locus, variable number of tandem repeat analysis (MLVA) of the fish-pathogen Francisella noatunensis.Brevik OJ, Ottem KF, Nylund ABMC Vet Res10.1186/1746-6148-7-52011Animals, Aquaculture, Base Sequence, DNA, Bacterial/chemistry/genetics, Fish Diseases/diagnosis/*microbiology, Francisella/*genetics/isolation & purification, *Gadus morhua, Gene Dosage, Genetic Variation, Gram-Negative Bacterial Infections/diagnosis/microbiology/*veterinary, Linkage Disequilibrium, *Minisatellite Repeats, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction/veterinary, Sequence AlignmentGenetics

Reference

@idauthorscataloguedoi/urltitle
7692Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18777)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18777
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75228Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID323963.1StrainInfo: A central database for resolving microbial strain identifiers