Name: Nonlabens ulvanivorans PLR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5725

Type strain:

Species: Nonlabens ulvanivorans

Strain Designation: PLR

Culture col. no.: DSM 22727, CIP 110082

Strain history: CIP <- 2009, T. Barbeyron, Station Biologique, Roscoff, France: strain PLR

NCBI tax ID(s): 906888 (species)

SI-ID 377883

CIP 110082, DSM 22727

Other strains from Nonlabens ulvanivorans

N. ulvanivorans JCM 19275
N. ulvanivorans JCM 19296
N. ulvanivorans JCM 19297
N. ulvanivorans JCM 19298
N. ulvanivorans JCM 19314

Section

Nonlabens ulvanivorans PLR is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from faeces of the mollusc Aplysia punctata fed with green algae.

Gram-negative
obligate aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Nonlabens*
	Species	**Nonlabens ulvanivorans**
	Full Scientific Name (LPSN)	Nonlabens ulvanivorans (Barbeyron et al. 2011) Yi and Chun 2012

Synonym

Persicivirga ulvanivorans

Information on morphological and physiological properties Morphology

[Ref.: #123719]	Gram stain	positive
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #123719]	Cell shape	rod-shaped

[Ref.: #123719]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16415]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16415]

Culture medium growth

[Ref.: #16415]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16415]

Culture medium composition

expand / minimize

[Ref.: #33657]

Culture medium

Marine agar (MA)

[Ref.: #33657]

Culture medium growth

[Ref.: #33657]

Culture medium composition

expand / minimize

[Ref.: #123719]

Culture medium

CIP Medium 13

[Ref.: #123719]

Culture medium growth

[Ref.: #123719]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #16415]			growth	20 °C
[Ref.: #33657]			growth	25 °C

[Ref.: #16415]	Temperature range	psychrophilic
[Ref.: #33657]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123719]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123719]		nitrate ChEBI	-	reduction
[Ref.: #123719]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123719]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123719]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123719]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123719]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123719]	12347	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16415]	Sample type/isolated from	faeces of the mollusc Aplysia punctata fed with green algae
[Ref.: #16415]	Host species	Aplysia punctata
[Ref.: #16415]	Geographic location (country and/or sea, region)	Bretagne, Pleubian
[Ref.: #16415]	Country	France
[Ref.: #16415]	Country ISO 3 Code	FRA
[Ref.: #16415]	Continent	Europe

[Ref.: #123719]	Sample type/isolated from	Feces, Aplysia punctata
[Ref.: #123719]	Geographic location (country and/or sea, region)	Roscoff
[Ref.: #123719]	Country	France
[Ref.: #123719]	Country ISO 3 Code	FRA
[Ref.: #123719]	Continent	Europe
[Ref.: #123719]	Isolation date	2008
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU902979 (>99% sequence identity) for Nonlabens from Microbeatlas

Aquatic Samples	2594
Soil Samples	86
Animal Samples	526
Plant Samples	30
Total Samples	3236

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16415]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123719]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16415]	Persicivirga sp. PLR 16S ribosomal RNA gene, partial sequence	GU902979	1402	ENA	906888 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nonlabens ulvanivorans DSM 22727	GCA_003001855	contig	GenBank	906888 tax ID	*
[Ref.: #66792]	Nonlabens ulvanivorans PLR	GCA_000732625	scaffold	GenBank	906888 tax ID	*
[Ref.: #66792]	Nonlabens ulvanivorans strain DSM 22727	906888.17	wgs	PATRIC	906888 tax ID	*
[Ref.: #66792]	Nonlabens ulvanivorans PLR	2617271264	draft	JGI IMG/M	906888 tax ID	*
[Ref.: #66792]	Nonlabens ulvanivorans DSM 22727	2593339289	draft	JGI IMG/M	906888 tax ID	*

[Ref.: #16415]

GC-content

35.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nonlabens ulvanivorans PLR NCBI: GCA_000732625.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nonlabens ulvanivorans PLR NCBI: GCA_000732625.1
[Ref.: #69480]	motile	no	89.873	no
[Ref.: #69480]	flagellated	no	96.734	no
[Ref.: #69480]	gram-positive	no	97.588	no
[Ref.: #69480]	anaerobic	no	99.259	no
[Ref.: #69480]	aerobic	yes	90.229	no
[Ref.: #69480]	halophile	no	54.592	no
[Ref.: #69480]	spore-forming	no	95.797	no
[Ref.: #69480]	thermophile	no	98.887	yes
[Ref.: #69480]	glucose-util	yes	83.709	no
[Ref.: #69480]	glucose-ferment	no	89.091	no

Availability in culture collections External links

[Ref.: #16415]

Culture collection no.

DSM 22727, CIP 110082

[Ref.: #75205]

SI-ID 377883

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonlabens arenilitoris sp. nov., a member of the family Flavobacteriaceae isolated from seashore sand.	Park S, Kang CH, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9893-5	2013	*
Phylogeny	Persicivirga ulvanivorans sp. nov., a marine member of the family Flavobacteriaceae that degrades ulvan from green algae.	Barbeyron T, Lerat Y, Sassi JF, Le Panse S, Helbert W, Collen PN	Int J Syst Evol Microbiol	10.1099/ijs.0.024489-0	2010	*

References

#16415

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22727

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33657 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75205

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377883.1 )

#123719 Collection of Institut Pasteur ; Curators of the CIP; CIP 110082
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Nonlabens ulvanivorans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF