Nonlabens ulvanivorans (DSM 22727, CIP 110082, PLR)

Name: Nonlabens ulvanivorans (DSM 22727, CIP 110082, PLR)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5725

Type strain

Strain Designation PLR

Culture col. no. DSM 22727 CIP 110082 PLR

NCBI tax ID(s) 906888

Special Collections DSMZ CIP

History 2009, T. Barbeyron, Station Biologique, Roscoff, France: strain PLR <- T. Barbeyron, Biology Station, Univ. Pierre and Marie Curie-Paris 6, Roscoff, France; PLR <- CEVA - European Res. Center Algae, Pleubian, France <- P. Nyvall CIP <- 2009, T. Barbeyron, Station Biologique, Roscoff, France: strain PLR

Links

Nonlabens ulvanivorans PLR is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from faeces of the mollusc Aplysia punctata fed with green algae.

Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 377883

CIP 110082,DSM 22727

@ref 20215

Last LPSN update 2026-02-09 11:19:02

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Nonlabens

Species Nonlabens ulvanivorans

Full scientific name Nonlabens ulvanivorans (Barbeyron et al. 2011) Yi and Chun 2012

Synonyms (1)

Persicivirga ulvanivorans

BacDive ID	Other strains from **Nonlabens ulvanivorans** (5)	Type strain
162459	N. ulvanivorans JCM 19275
162468	N. ulvanivorans JCM 19296
162469	N. ulvanivorans JCM 19297
162470	N. ulvanivorans JCM 19298
162479	N. ulvanivorans JCM 19314

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
123719	positive	rod-shaped
125439	negative		99.6
125438			92.5
125438	negative		97.979

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16415	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33657	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
123719	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16415	positive	growth	20
33657	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
123719	obligate aerobe
125439	obligate aerobe	96.1

Spore formation

@ref	Spore formation	Confidence
125439		98.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123719	17632 ChEBI	nitrate	-	reduction
123719	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123719	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123719	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123719	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
123719	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123719	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
16415	faeces of the mollusc Aplysia punctata fed with green algae	Aplysia punctata	Bretagne, Pleubian	France	FRA	Europe
123719	Feces, Aplysia punctata		Roscoff	France	FRA	Europe	2008

Taxonmaps

69479

Global distribution of 16S sequence GU902979 (>99% sequence identity) for Nonlabens from Microbeatlas

Aquatic Samples	2594
Soil Samples	86
Animal Samples	526
Plant Samples	30
Total Samples	3236

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16415	1	Risk group (German classification) According to TRBA 466
123719	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM300185v1 assembly for Nonlabens ulvanivorans DSM 22727	contig	GCA_003001855	906888.17	2593339289	906888	74.36
66792	ASM73262v1 assembly for Nonlabens ulvanivorans PLR	scaffold	GCA_000732625	906888.9	2617271264	906888	68.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16415	Persicivirga sp. PLR 16S ribosomal RNA gene, partial sequence	GU902979	1402		906888

GC content

@ref	GC-content (mol%)	Method
16415	35.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nonlabens ulvanivorans PLR
NCBI: GCA_000732625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	no	66.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nonlabens ulvanivorans PLR
NCBI: GCA_000732625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	no
125438	anaerobic	anaerobicⓘ	no	97.88	no
125438	aerobic	aerobicⓘ	yes	89.32	yes
125438	spore-forming	spore-formingⓘ	no	88.28	no
125438	thermophilic	thermophileⓘ	no	96.11	no
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonlabens arenilitoris sp. nov., a member of the family Flavobacteriaceae isolated from seashore sand.	Park S, Kang CH, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9893-5	2013
Phylogeny	Persicivirga ulvanivorans sp. nov., a marine member of the family Flavobacteriaceae that degrades ulvan from green algae.	Barbeyron T, Lerat Y, Sassi JF, Le Panse S, Helbert W, Collen PN	Int J Syst Evol Microbiol	10.1099/ijs.0.024489-0	2010

References

#16415	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22727
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33657	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123719	Collection of Institut Pasteur ; Curators of the CIP; CIP 110082
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nonlabens ulvanivorans (DSM 22727, CIP 110082, PLR)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003001855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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