Name: Nonlabens xylanidelens SW256
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5724

Type strain:

Species: Nonlabens xylanidelens

Strain Designation: SW256

Culture col. no.: DSM 16809, NCIMB 14027

Strain history: <- L. A. O'Sullivan; SW256

NCBI tax ID(s): 191564 (species)

SI-ID 237165

NCIMB 14027, DSM 16809

Section

Nonlabens xylanidelens SW256 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hope cove coastal seawater.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Nonlabens*
	Species	**Nonlabens xylanidelens**
	Full Scientific Name (LPSN)	Nonlabens xylanidelens (O'Sullivan et al. 2006) Yi and Chun 2012

Synonym

Persicivirga xylanidelens

Information on morphological and physiological properties Morphology

[Ref.: #31634]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #31634]	Cell length	2.2-7.5 µm

[Ref.: #31634]	Cell width	0.5-0.6 µm

[Ref.: #31634]	Cell shape	rod-shaped

[Ref.: #31634]	Motility	no

[Ref.: #31634]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6609]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6609]

Culture medium growth

[Ref.: #6609]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6609]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6609]	growth	28 °C
[Ref.: #31634]	growth	20 °C
[Ref.: #31634]	optimum	20 °C

[Ref.: #6609]	Temperature range	mesophilic
[Ref.: #31634]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31634]

Oxygen tolerance

aerobe

[Ref.: #31634]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

[Ref.: #31634]

Observation

aggregates in chains

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6609]	Sample type/isolated from	hope cove coastal seawater
[Ref.: #6609]	Geographic location (country and/or sea, region)	near Plymouth, Hope Cove
[Ref.: #6609]	Country	United Kingdom
[Ref.: #6609]	Country ISO 3 Code	GBR
[Ref.: #6609]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6609]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6609]	Persicivirga xylanidelens strain SW256 16S ribosomal RNA gene, partial sequence	AF493688	1231	ENA	191564 tax ID
[Ref.: #6609]	Persicivirga xylanidelens partial 16S rRNA gene, type strain DSM16809T	FR733714	1513	ENA	191564 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nonlabens xylanidelens DSM 16809	GCA_002934445	scaffold	GenBank	191564 tax ID	*
[Ref.: #66792]	Nonlabens xylanidelens DSM 16809	GCA_002954345	contig	GenBank	191564 tax ID	*
[Ref.: #66792]	Nonlabens xylanidelens strain DSM 16809	191564.5	wgs	PATRIC	191564 tax ID	*
[Ref.: #66792]	Nonlabens xylanidelens strain DSM 16809	191564.4	wgs	PATRIC	191564 tax ID	*
[Ref.: #66792]	Nonlabens xylanidelens DSM 16809	2593339281	draft	JGI IMG/M	191564 tax ID	*

[Ref.: #6609]

GC-content

34.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nonlabens xylanidelens DSM 16809 NCBI: GCA_002934445.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nonlabens xylanidelens DSM 16809 NCBI: GCA_002934445.1
[Ref.: #69480]	flagellated	no	95.021	yes
[Ref.: #69480]	gram-positive	no	97.713	yes
[Ref.: #69480]	anaerobic	no	99.23	yes
[Ref.: #69480]	aerobic	yes	95.231	yes
[Ref.: #69480]	halophile	yes	52.349	no
[Ref.: #69480]	spore-forming	no	95.224	yes
[Ref.: #69480]	glucose-util	yes	81.846	no
[Ref.: #69480]	thermophile	no	99.474	yes
[Ref.: #69480]	motile	no	88.577	no
[Ref.: #69480]	glucose-ferment	no	90.473	no

Availability in culture collections External links

[Ref.: #6609]

Culture collection no.

DSM 16809, NCIMB 14027

[Ref.: #75204]

SI-ID 237165

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Donghaeana dokdonensis Yoon et al. 2006 as Persicivirga dokdonensis comb. nov. and emended descriptions of the genus Persicivirga and of Persicivirga xylanidelens O'Sullivan et al. 2006.	Nedashkovskaya OI, Kwon KK, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.005116-0	2009	*
Phylogeny	Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov.	O'Sullivan LA, Rinna J, Humphreys G, Weightman AJ, Fry JC	Int J Syst Evol Microbiol	10.1099/ijs.0.63941-0	2006	*

References

#6609

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16809

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31634

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27917 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75204

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID237165.1 )

#27917

IJSEM 169 2006 ( DOI 10.1099/ijs.0.63941-0 , PubMed 16403883 )

* These data were automatically processed and therefore are not curated

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Nonlabens xylanidelens DSM 16809

Nonlabens xylanidelens DSM 16809

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