Name: Nonlabens ulvanivorans JCM 19314
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162479

Type strain:

Species: Nonlabens ulvanivorans

Culture col. no.: JCM 19314

Strain history: T. Sawabe NR24.

NCBI tax ID(s): 906888 (species)

Special Collections

Other strains from Nonlabens ulvanivorans

Section

When using BacDive for research please cite our paper

Nonlabens ulvanivorans JCM 19314 is a mesophilic bacterium that was isolated from Rock surface on the coat near Nanaehama.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Nonlabens*
	Species	**Nonlabens ulvanivorans**
	Full Scientific Name (LPSN)	Nonlabens ulvanivorans (Barbeyron et al. 2011) Yi and Chun 2012

Synonym

Persicivirga ulvanivorans

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %98.539
[Ref.: #125439]	Gram stain	negative Confidence in %99.6

[Ref.: #125438]	Motility	no Confidence in %91.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %98

[Ref.: #125439]

Ability of spore formation

no Confidence in %97.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rock surface on the coat near Nanaehama
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hakodate
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nonlabens ulvanivorans JCM 19314	GCA_000755325	contig	GenBank ENA	906888 tax ID
[Ref.: #66792]	Nonlabens ulvanivorans strain JCM19314	906888.6	wgs	PATRIC	906888 tax ID	*
[Ref.: #66792]	Nonlabens ulvanivorans JCM 19314	2609460230	draft	JGI IMG/M	906888 tax ID	*

[Ref.: #67770]

GC-content

35.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nonlabens ulvanivorans strain JCM19314 PATRIC: 906888.6
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.539	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	98.324	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	88.937	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.833	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.121	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	91.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nonlabens ulvanivorans JCM 19314 NCBI: GCA_000755325
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	68.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19314

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Nonlabens ulvanivorans in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Nonlabens ulvanivorans strain JCM19314

Nonlabens ulvanivorans JCM 19314

Change proposal

Change proposal