Name: Flavobacterium psychrophilum TG 02/86
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5530

Type strain:

Species: Flavobacterium psychrophilum

Strain Designation: TG 02/86

Culture col. no.: DSM 21280, ATCC 49511, CIP 103535, JIP 02/86

Strain history: CIP <- 1993, ATCC, Flexibacter psychrophilus <- 1992, J.F. Bernardet, INRA, Jouy en Josas, France: strain TG 02/86

NCBI tax ID(s): 96345 (species)

SI-ID 42526

ATCC 49511, CIP 103535

Other strains from Flavobacterium psychrophilum

F. psychrophilum 3068, DSM 3660, IAM 14308, NCMB ... (type strain)
F. psychrophilum CIP 109952, JIP 08/99
F. psychrophilum CIP 109955, FPC 831
F. psychrophilum CIP 109953, JIP 16/00
F. psychrophilum LVDJ XP189, CIP 109954
F. psychrophilum CIP 109956, FPC 840
F. psychrophilum OSU THC02-90, CIP 109957
F. psychrophilum LNPAA P01/88, CIP 103536, ATCC ...

Section

Flavobacterium psychrophilum TG 02/86 is a psychrophilic, Gram-negative animal pathogen that was isolated from kidney of a diseased rainbow trout fry.

Gram-negative
animal pathogen
psychrophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium psychrophilum**
	Full Scientific Name (LPSN)	Flavobacterium psychrophilum (Bernardet and Grimont 1989 ex Borg 1960) Bernardet et al. 1996

	Synonym	Cytophaga psychrophila
	Synonym	Flexibacter psychrophilus

Information on morphological and physiological properties Morphology

[Ref.: #122025]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #122025]	Cell shape	rod-shaped

[Ref.: #122025]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15602]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15602]

Culture medium growth

[Ref.: #15602]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15602]

Culture medium composition

expand / minimize

[Ref.: #42074]

Culture medium

MEDIUM 36 - for Flavobacterium psychrophilum

[Ref.: #42074]

Culture medium growth

[Ref.: #42074]

Culture medium composition

expand / minimize

[Ref.: #122025]

Culture medium

CIP Medium 566

[Ref.: #122025]

Culture medium growth

[Ref.: #122025]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #15602]			growth	15 °C
[Ref.: #42074]			growth	22 °C

[Ref.: #15602]	Temperature range	psychrophilic
[Ref.: #42074]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Salt	Tested relation		Salt conc.
[Ref.: #122025]	NaCl		growth	0	%
[Ref.: #122025]	NaCl	no	growth	2	%
[Ref.: #122025]	NaCl	no	growth	4	%
[Ref.: #122025]	NaCl	no	growth	6	%
[Ref.: #122025]	NaCl	no	growth	8	%
[Ref.: #122025]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122025]	citrate ChEBI	-	carbon source
[Ref.: #122025]	esculin ChEBI	-	hydrolysis
[Ref.: #122025]	hippurate ChEBI	-	hydrolysis
[Ref.: #122025]	malonate ChEBI	-	assimilation
[Ref.: #122025]	nitrate ChEBI	-	builds gas from
[Ref.: #122025]	nitrate ChEBI	-	reduction
[Ref.: #122025]	nitrite ChEBI	-	builds gas from
[Ref.: #122025]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122025]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122025]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122025]		acetoin ChEBI	-
[Ref.: #122025]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #122025]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122025]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122025]	caseinase	+	3.4.21.50
[Ref.: #122025]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122025]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122025]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #122025]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122025]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122025]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122025]	oxidase	+
[Ref.: #122025]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122025]	tryptophan deaminase	-
[Ref.: #122025]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122025]	7570	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15602]	Sample type/isolated from	kidney of a diseased rainbow trout fry
[Ref.: #15602]	Geographic location (country and/or sea, region)	Seine Maritime
[Ref.: #15602]	Country	France
[Ref.: #15602]	Country ISO 3 Code	FRA
[Ref.: #15602]	Continent	Europe

[Ref.: #122025]	Sample type/isolated from	Animal, Rainbow trout fry, kidney
[Ref.: #122025]	Geographic location (country and/or sea, region)	Biville la Rivière
[Ref.: #122025]	Country	France
[Ref.: #122025]	Country ISO 3 Code	FRA
[Ref.: #122025]	Continent	Europe
[Ref.: #122025]	Isolation date	1986
* marker position based on {}

Isolation sources categories

#Host	#Fishes	#Salmonidae
#Host Body-Site	#Urogenital tract	#Kidney

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15602]	Pathogenicity (animal)	yes
[Ref.: #15602]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122025]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium psychrophilum JIP02/86	402612.5	complete	PATRIC	402612 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium psychrophilum JIP02/86 PATRIC: 402612.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium psychrophilum JIP02/86 PATRIC: 402612.5
[Ref.: #69480]	gram-positive	no	98.831	no
[Ref.: #69480]	anaerobic	no	98.292	no
[Ref.: #69480]	halophile	no	94.068	no
[Ref.: #69480]	spore-forming	no	95.788	no
[Ref.: #69480]	glucose-util	yes	72.78	no
[Ref.: #69480]	aerobic	yes	78.799	no
[Ref.: #69480]	flagellated	no	95.773	no
[Ref.: #69480]	thermophile	no	97.952	no
[Ref.: #69480]	motile	no	91.806	no
[Ref.: #69480]	glucose-ferment	no	92.963	no

Availability in culture collections External links

[Ref.: #15602]

Culture collection no.

DSM 21280, ATCC 49511, CIP 103535, JIP 02/86

[Ref.: #75013]

SI-ID 42526

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Enzymology	Identification of a Novel Elastin-Degrading Enzyme from the Fish Pathogen Flavobacterium psychrophilum.	Rochat T, Perez-Pascual D, Nilsen H, Carpentier M, Bridel S, Bernardet JF, Duchaud E	Appl Environ Microbiol	10.1128/AEM.02535-18	2019	*
Metabolism	Antigenic proteins of Flavobacterium psychrophilum recognized by ayu Plecoglossus altivelis antisera.	Kato G, Sakai T, Suzuki K, Yamaguchi K, Takano T, Matsuyama T, Nakayasu C	Dis Aquat Organ	10.3354/dao02679	2014	*
Metabolism	Deoxyribonucleoside kinases in two aquatic bacteria with high specificity for thymidine and deoxyadenosine.	Tinta T, Christiansen LS, Konrad A, Liberles DA, Turk V, Munch-Petersen B, Piskur J, Clausen AR	FEMS Microbiol Lett	10.1111/j.1574-6968.2012.02565.x	2012	*
Genetics	Complete genome sequence of the fish pathogen Flavobacterium psychrophilum.	Duchaud E, Boussaha M, Loux V, Bernardet JF, Michel C, Kerouault B, Mondot S, Nicolas P, Bossy R, Caron C, Bessieres P, Gibrat JF, Claverol S, Dumetz F, Le Henaff M, Benmansour A	Nat Biotechnol	10.1038/nbt1313	2007	*
Phenotype	Different Phenotypes of Mature Biofilm in Flavobacterium psychrophilum Share a Potential for Virulence That Differs from Planktonic State.	Levipan HA, Avendano-Herrera R	Front Cell Infect Microbiol	10.3389/fcimb.2017.00076	2017	*
	Zebrafish (Danio rerio) as an animal model for bath infection by Flavobacterium psychrophilum.	Avendano-Herrera R, Benavides I, Espina JA, Soto-Comte D, Poblete-Morales M, Valdes JA, Feijoo CG, Reyes AE	J Fish Dis	10.1111/jfd.13156	2020	*
	Cytotoxic activity of Flavobacterium psychrophilum in skeletal muscle cells of rainbow trout (Oncorhynchus mykiss).	Iturriaga M, Espinoza MB, Poblete-Morales M, Feijoo CG, Reyes AE, Molina A, Avendano-Herrera R, Valdes JA	Vet Microbiol	10.1016/j.vetmic.2017.09.009	2017	*
	Genomic structure of bacteriophage 6H and its distribution as prophage in Flavobacterium psychrophilum strains.	Castillo D, Espejo R, Middelboe M	FEMS Microbiol Lett	10.1111/1574-6968.12342	2013	*

References

#15602

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21280

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42074 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75013

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42526.1 )

#122025 Collection of Institut Pasteur ; Curators of the CIP; CIP 103535
* These data were automatically processed and therefore are not curated

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Flavobacterium psychrophilum JIP02/86

Flavobacterium psychrophilum JIP02/86

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