Flavobacterium psychrophilum (CIP 109956, FPC 840)

Name: Flavobacterium psychrophilum (CIP 109956, FPC 840)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139583

Type strain

Culture col. no. CIP 109956 FPC 840

NCBI tax ID(s) 96345

Special Collections CIP

History 2009, J.F. Bernardet, INRA, Jouy en Josas, France: strain FPC 840 CIP <- 2009, J.F. Bernardet, INRA, Jouy en Josas, France: strain FPC 840

Links

Flavobacterium psychrophilum CIP 109956 is a facultative anaerobe, Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

Gram-negative rod-shaped facultative anaerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 371367

CIP 109956

@ref 20215

Last LPSN update 2026-02-09 11:33:23

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium psychrophilum

Full scientific name Flavobacterium psychrophilum (Bernardet and Grimont 1989 ex Borg 1960) Bernardet et al. 1996

Synonyms (2)

Cytophaga psychrophila
Flexibacter psychrophilus

BacDive ID	Other strains from **Flavobacterium psychrophilum** (8)	Type strain
5529	F. psychrophilum 3068, DSM 3660, IAM 14308, NCMB 1947, JCM ... (type strain)
5530	F. psychrophilum TG 02/86, DSM 21280, ATCC 49511, CIP 103535, ...
134699	F. psychrophilum CIP 109952, JIP 08/99
139028	F. psychrophilum CIP 109955, FPC 831
139581	F. psychrophilum CIP 109953, JIP 16/00
139582	F. psychrophilum LVDJ XP189, CIP 109954
139584	F. psychrophilum OSU THC02-90, CIP 109957
139585	F. psychrophilum LNPAA P01/88, CIP 103536, ATCC 49510

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
42071	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
42071	MEDIUM 714 - for Flavobacterium columnare		Distilled water make up to (1000.000 ml);Agar (10.000 g);Yeast extract (0.500 g);Beef extract (0.200 g);Acetic acid (0.200 ml);Calf serum (50.000 ml);Bacto-Tryptone (0.500 g)
42071	CIP Medium 714			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
42071	positive	growth	20

Physiology and metabolism

Oxygen tolerance

42071

Oxygen tolerancefacultative anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
42071	17632 ChEBI	nitrate	-	reduction
42071	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
42071	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
42071	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
42071	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
42071	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
42071	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
42071		Tokushima	Japan	JPN	Asia
42071	Animal, Fish ayu, kidney Plecoglossus altivelis	Tokushima	Japan	JPN	Asia	1987

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42071	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	FPC840_V1 assembly for Flavobacterium psychrophilum FPC 840	contig	GCA_900186575	96345.114	2879206826	96345	19.02

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Host specificity and virulence of Flavobacterium psychrophilum: a comparative study in ayu (Plecoglossus altivelis) and rainbow trout (Oncorhynchus mykiss) hosts.	Fujiwara-Nagata E, Rochat T, Lee BH, Lallias D, Rigaudeau D, Duchaud E.	Vet Res	10.1186/s13567-024-01326-6	2024
Metabolism	Identification of a Novel Elastin-Degrading Enzyme from the Fish Pathogen Flavobacterium psychrophilum.	Rochat T, Perez-Pascual D, Nilsen H, Carpentier M, Bridel S, Bernardet JF, Duchaud E.	Appl Environ Microbiol	10.1128/aem.02535-18	2019
Genetics	Genomic Characterization of Flavobacterium psychrophilum Serotypes and Development of a Multiplex PCR-Based Serotyping Scheme.	Rochat T, Fujiwara-Nagata E, Calvez S, Dalsgaard I, Madsen L, Calteau A, Lunazzi A, Nicolas P, Wiklund T, Bernardet JF, Duchaud E.	Front Microbiol	10.3389/fmicb.2017.01752	2017
Genetics	Genomic Diversity and Evolution of the Fish Pathogen Flavobacterium psychrophilum.	Duchaud E, Rochat T, Habib C, Barbier P, Loux V, Guerin C, Dalsgaard I, Madsen L, Nilsen H, Sundell K, Wiklund T, Strepparava N, Wahli T, Caburlotto G, Manfrin A, Wiens GD, Fujiwara-Nagata E, Avendano-Herrera R, Bernardet JF, Nicolas P.	Front Microbiol	10.3389/fmicb.2018.00138	2018
	Population structure of the fish pathogen Flavobacterium psychrophilum at whole-country and model river levels in Japan.	Fujiwara-Nagata E, Chantry-Darmon C, Bernardet JF, Eguchi M, Duchaud E, Nicolas P.	Vet Res	10.1186/1297-9716-44-34	2013
Phylogeny	Population structure of the fish-pathogenic bacterium Flavobacterium psychrophilum.	Nicolas P, Mondot S, Achaz G, Bouchenot C, Bernardet JF, Duchaud E.	Appl Environ Microbiol	10.1128/aem.00244-08	2008

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42071	Collection of Institut Pasteur ; Curators of the CIP; CIP 109956
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium psychrophilum (CIP 109956, FPC 840)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900186575

Genome-based predictions

Literature

Literature

References

BacDive

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