Name: Cesiribacter andamanensis AMV16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5475

Type strain:

Species: Cesiribacter andamanensis

Strain Designation: AMV16

Culture col. no.: DSM 22818, CCUG 58431, CIP 110152

Strain history: CIP <- 2010, S. Shivaji, CCMB, Hyderabad, India: strain AMV16

NCBI tax ID(s): 649507 (species)

SI-ID 377746

CCUG 58431, DSM 22818, CIP 110152

Section

Cesiribacter andamanensis AMV16 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from soil from a mud volcano.

Gram-negative
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cesiribacteraceae*
	Genus	*Cesiribacter*
	Species	**Cesiribacter andamanensis**
	Full Scientific Name (LPSN)	Cesiribacter andamanensis Srinivas et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #116376]	Gram stain	negative

[Ref.: #116376]	Cell shape	rod-shaped

[Ref.: #116376]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37688]

Culture medium

Marine agar (MA)

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Culture medium growth

[Ref.: #37688]

Culture medium composition

expand / minimize

[Ref.: #116376]

Culture medium

CIP Medium 566

[Ref.: #116376]

Culture medium growth

[Ref.: #116376]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116376]

Culture medium

CIP Medium 186

[Ref.: #116376]

Culture medium growth

[Ref.: #116376]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116376]

Culture medium

CIP Medium 13

[Ref.: #116376]

Culture medium growth

[Ref.: #116376]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #37688]			growth	30 °C

[Ref.: #37688]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116376]

Oxygen tolerance

obligate aerobe

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116376]		nitrate ChEBI	+	reduction
[Ref.: #116376]		nitrite ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #116376]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116376]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116376]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116376]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116376]	12399	-	+	-	-	-	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16533]	Sample type/isolated from	soil from a mud volcano
[Ref.: #16533]	Geographic location (country and/or sea, region)	Andaman, Baratang Island
[Ref.: #16533]	Country	India
[Ref.: #16533]	Country ISO 3 Code	IND
[Ref.: #16533]	Continent	Asia

[Ref.: #116376]	Sample type/isolated from	Environment, Soil, mud volcano
[Ref.: #116376]	Geographic location (country and/or sea, region)	Baratung Island
[Ref.: #116376]	Country	India
[Ref.: #116376]	Country ISO 3 Code	IND
[Ref.: #116376]	Continent	Asia
[Ref.: #116376]	Isolation date	2009
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN396961 (>99% sequence identity) for Cesiribacter andamanensis subclade from Microbeatlas

Aquatic Samples	279
Soil Samples	253
Animal Samples	1918
Plant Samples	24
Total Samples	2474

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16533]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116376]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16533]	Cesiribacter andamanensis partial 16S rRNA gene, strain AMV16	FN396961	1502	ENA	1279009 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cesiribacter andamanensis AMV16	GCA_000348925	contig	GenBank	1279009 tax ID	*
[Ref.: #66792]	Cesiribacter andamanensis AMV16	1279009.4	wgs	PATRIC	1279009 tax ID	*
[Ref.: #66792]	Cesiribacter andamanensis AMV16	2529293184	draft	JGI IMG/M	1279009 tax ID	*

[Ref.: #16533]

GC-content

50.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cesiribacter andamanensis AMV16 PATRIC: 1279009.4
[Ref.: #69480]	motile	no	88.96	no
[Ref.: #69480]	gram-positive	no	96.805	no
[Ref.: #69480]	anaerobic	no	98.044	no
[Ref.: #69480]	aerobic	yes	90.49	no
[Ref.: #69480]	halophile	no	81.835	no
[Ref.: #69480]	spore-forming	no	94.21	no
[Ref.: #69480]	glucose-util	yes	88.168	no
[Ref.: #69480]	flagellated	no	95.888	no
[Ref.: #69480]	thermophile	no	94.396	no
[Ref.: #69480]	glucose-ferment	no	87.205	no

Availability in culture collections External links

[Ref.: #16533]

Culture collection no.

DSM 22818, CCUG 58431, CIP 110152

[Ref.: #74963]

SI-ID 377746

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Cesiribacter andamanensis Strain AMV16T, Isolated from a Soil Sample from a Mud Volcano in the Andaman Islands, India.	Shivaji S, Ara S, Begum Z, Srinivas TN, Singh A, Kumar Pinnaka A	Genome Announc	10.1128/genomeA.00240-13	2013	*
Phylogeny	Nafulsella turpanensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil.	Zhang L, Shen X, Liu Y, Li S	Int J Syst Evol Microbiol	10.1099/ijs.0.044651-0	2012	*
Phylogeny	Cesiribacter roseus sp. nov., a pink-pigmented bacterium isolated from desert sand.	Liu M, Qi H, Luo X, Dai J, Peng F, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.028423-0	2011	*
Phylogeny	Cesiribacter andamanensis gen. nov., sp. nov., isolated from a soil sample from a mud volcano.	Srinivas TNR, Anil Kumar P, Madhu S, Sunil B, Sharma TVRS, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.025429-0	2010	*

References

#16533

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22818

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37688 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74963

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377746.1 )

#116376 Collection of Institut Pasteur ; Curators of the CIP; CIP 110152
* These data were automatically processed and therefore are not curated

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