Name: Aequorivita lipolytica Y10-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5476

Type strain:

Species: Aequorivita lipolytica

Strain Designation: Y10-2

Culture col. no.: DSM 14236, ACAM 641, CIP 107455, LMG 21430

Strain history: CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain ACAM 641

NCBI tax ID(s): 153267 (species)

SI-ID 86432

LMG 21430, DSM 14236, CIP 107455

Section

Aequorivita lipolytica Y10-2 is a psychrophilic, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aequorivita*
	Species	**Aequorivita lipolytica**
	Full Scientific Name (LPSN)	Aequorivita lipolytica Bowman and Nichols 2002

Information on morphological and physiological properties Morphology

[Ref.: #120619]	Gram stain	negative

[Ref.: #120619]	Cell shape	rod-shaped

[Ref.: #120619]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5264]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5264]

Culture medium growth

[Ref.: #5264]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5264]

Culture medium composition

expand / minimize

[Ref.: #33802]

Culture medium

Marine agar (MA)

[Ref.: #33802]

Culture medium growth

[Ref.: #33802]

Culture medium composition

expand / minimize

[Ref.: #120619]

Culture medium

CIP Medium 13

[Ref.: #120619]

Culture medium growth

[Ref.: #120619]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5264]		growth	20 °C
[Ref.: #33802]		growth	20 °C
[Ref.: #120619]		growth	5-25 °C
[Ref.: #120619]	no	growth	30 °C
[Ref.: #120619]	no	growth	37 °C
[Ref.: #120619]	no	growth	41 °C
[Ref.: #120619]	no	growth	45 °C

[Ref.: #5264]	Temperature range	psychrophilic
[Ref.: #33802]	Temperature range	psychrophilic
[Ref.: #120619]	Temperature range	psychrophilic
[Ref.: #120619]	Temperature range	mesophilic
[Ref.: #120619]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #120619]	NaCl	no	growth	0	%
[Ref.: #120619]	NaCl	no	growth	2	%
[Ref.: #120619]	NaCl	no	growth	4	%
[Ref.: #120619]	NaCl	no	growth	6	%
[Ref.: #120619]	NaCl	no	growth	8	%
[Ref.: #120619]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120619]	esculin ChEBI	-	hydrolysis
[Ref.: #120619]	hippurate ChEBI	-	hydrolysis
[Ref.: #120619]	malonate ChEBI	-	assimilation
[Ref.: #120619]	nitrate ChEBI	-	reduction
[Ref.: #120619]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120619]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120619]		acetoin ChEBI	-
[Ref.: #120619]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120619]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120619]	amylase	-
[Ref.: #120619]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120619]	caseinase	+	3.4.21.50
[Ref.: #120619]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120619]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120619]	gelatinase	+
[Ref.: #120619]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120619]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120619]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120619]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120619]	oxidase	-
[Ref.: #120619]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120619]	tryptophan deaminase	-
[Ref.: #120619]	tween esterase	+
[Ref.: #120619]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120619]	10364	-	+	+	+	-	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5264]	Sample type/isolated from	seawater
[Ref.: #5264]	Geographic location (country and/or sea, region)	Mertz Polynya, Antarctic coast
[Ref.: #5264]	Country	Antarctica
[Ref.: #5264]	Country ISO 3 Code	ATA
[Ref.: #5264]	Continent	Australia and Oceania

[Ref.: #120619]	Sample type/isolated from	Environment, Seawater
[Ref.: #120619]	Geographic location (country and/or sea, region)	Vestfold Hills
[Ref.: #120619]	Country	Antarctica
[Ref.: #120619]	Country ISO 3 Code	ATA
[Ref.: #120619]	Continent	Antarctica
[Ref.: #120619]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY027805 (>99% sequence identity) for Aequorivita lipolytica from Microbeatlas

Aquatic Samples	16
Soil Samples	10
Animal Samples	3
Plant Samples
Total Samples	29

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5264]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120619]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Aequorivita lipolytica Y10-2T 16S ribosomal RNA gene, partial sequence	AY027805	1422	ENA	153267 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aequorivita lipolytica Y10-2	GCA_007997135	contig	GenBank	153267 tax ID	*
[Ref.: #66792]	Aequorivita lipolytica strain Y10-2	153267.4	wgs	PATRIC	153267 tax ID	*
[Ref.: #66792]	Aequorivita lipolytica strain type strain: CIP107455 strain CIP107455T	153267.3	wgs	PATRIC	153267 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aequorivita lipolytica strain Y10-2 PATRIC: 153267.4
[Ref.: #69480]	motile	no	87.409	no
[Ref.: #69480]	gram-positive	no	98.749	no
[Ref.: #69480]	anaerobic	no	98.709	no
[Ref.: #69480]	aerobic	yes	90.564	no
[Ref.: #69480]	halophile	yes	64.623	no
[Ref.: #69480]	spore-forming	no	94.908	no
[Ref.: #69480]	thermophile	no	99.295	yes
[Ref.: #69480]	glucose-util	yes	77.664	no
[Ref.: #69480]	flagellated	no	95.504	no
[Ref.: #69480]	glucose-ferment	no	92.93	no

Availability in culture collections External links

[Ref.: #5264]

Culture collection no.

DSM 14236, ACAM 641, CIP 107455, LMG 21430

[Ref.: #74964]

SI-ID 86432

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats.	Bowman JP, Nichols DS	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1533	2002	*

References

#5264

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14236

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33802 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74964

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID86432.1 )

#120619 Collection of Institut Pasteur ; Curators of the CIP; CIP 107455
* These data were automatically processed and therefore are not curated

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Aequorivita lipolytica strain Y10-2

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