Aequorivita lipolytica (DSM 14236, ACAM 641, Y10-2)

Name: Aequorivita lipolytica (DSM 14236, ACAM 641, Y10-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5476

Type strain

Strain Designation Y10-2

Culture col. no. DSM 14236 ACAM 641 Y10-2 CIP 107455 LMG 21430

NCBI tax ID(s) 153267

Special Collections DSMZ CIP

Links

Aequorivita lipolytica Y10-2 is a psychrophilic, Gram-negative, rod-shaped prokaryote that was isolated from seawater.

Gram-negative rod-shaped psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 86432

LMG 21430,DSM 14236,CIP 107455

@ref 20215

Last LPSN update 2025-12-16 09:48:04

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aequorivita

Species Aequorivita lipolytica

Full scientific name Aequorivita lipolytica Bowman and Nichols 2002

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120619	negative	rod-shaped
125438			93.5
125438	negative		99.231
125439	negative		99.9

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5264	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33802	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120619	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5264	positive	growth	20	psychrophilic
33802	positive	growth	20	psychrophilic
120619	positive	growth	5-25	psychrophilic
120619	negative	growth	30
120619	negative	growth	37
120619	negative	growth	41
120619	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.3

Spore formation

@ref	Spore formation	Confidence
125439		98.7

Halophily

@ref	Salt	Tested relation	Concentration
120619	NaCl	growth	0 %
120619	NaCl	growth	2 %
120619	NaCl	growth	4 %
120619	NaCl	growth	6 %
120619	NaCl	growth	8 %
120619	NaCl	growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120619	4853 ChEBI	esculin	-	hydrolysis
120619	606565 ChEBI	hippurate	-	hydrolysis
120619	15792 ChEBI	malonate	-	assimilation
120619	17632 ChEBI	nitrate	-	reduction
120619	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120619	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120619	15688 ChEBI	acetoin	-
120619	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120619	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120619	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120619	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120619	caseinase	+	3.4.21.50
120619	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120619	gamma-glutamyltransferase	-	2.3.2.2
120619	gelatinase	+
120619	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
120619	lipase	+
68382	lipase (C 14)	-		from API zym
120619	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120619	ornithine decarboxylase	-	4.1.1.17
120619	oxidase	-
120619	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
120619	tryptophan deaminase	-
120619	tween esterase	+
120619	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120619	-	+	+	+	-	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
5264	seawater	Mertz Polynya, Antarctic coast	Antarctica	ATA	Australia and Oceania
120619	Environment, Seawater	Vestfold Hills	Antarctica	ATA	Antarctica	2000

Taxonmaps

69479

Global distribution of 16S sequence AY027805 (>99% sequence identity) for Aequorivita lipolytica from Microbeatlas

Aquatic Samples	16
Soil Samples	10
Animal Samples	3
Plant Samples
Total Samples	29

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5264	1	Risk group (German classification) According to TRBA 466
120619	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Aequorivita CIP107455T annotated assembly for Aequorivita lipolytica type strain: CIP107455	scaffold	GCA_900489485	153267.3	2837405042	153267	65.96
66792	ASM799713v1 assembly for Aequorivita lipolytica Y10-2	contig	GCA_007997135	153267.4	8118569397	153267	64.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Aequorivita lipolytica Y10-2T 16S ribosomal RNA gene, partial sequence	AY027805	1422		153267

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aequorivita lipolytica Y10-2
NCBI: GCA_007997135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	no	80.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aequorivita lipolytica strain Y10-2
PATRIC: 153267.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.23	no
125438	anaerobic	anaerobicⓘ	no	96.99	no
125438	spore-forming	spore-formingⓘ	no	89.83	no
125438	aerobic	aerobicⓘ	yes	88.04	no
125438	thermophilic	thermophileⓘ	no	96.42	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats.	Bowman JP, Nichols DS	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1533	2002

References

#5264	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14236
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33802	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120619	Collection of Institut Pasteur ; Curators of the CIP; CIP 107455
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aequorivita lipolytica (DSM 14236, ACAM 641, Y10-2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900489485

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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