Strain identifier

BacDive ID: 5476

Type strain: Yes

Species: Aequorivita lipolytica

Strain Designation: Y10-2

Strain history: CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain ACAM 641

NCBI tax ID(s): 153267 (species)

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General

@ref: 5264

BacDive-ID: 5476

DSM-Number: 14236

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-negative, rod-shaped

description: Aequorivita lipolytica Y10-2 is a psychrophilic, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 153267
  • Matching level: species

strain history

@refhistory
5264<- CIP107455 <- J. Bowman, University of Tasmania, Hobart, Australia; ACAM 641 {2002} <- M. Smith;
338022002, J. Bowman, Tasmania Univ., Tasmania, Australie: strain ACAM 641
120619CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain ACAM 641

doi: 10.13145/bacdive5476.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aequorivita
  • species: Aequorivita lipolytica
  • full scientific name: Aequorivita lipolytica Bowman and Nichols 2002

@ref: 5264

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aequorivita

species: Aequorivita lipolytica

full scientific name: Aequorivita lipolytica Bowman and Nichols 2002

strain designation: Y10-2

type strain: yes

Morphology

cell morphology

  • @ref: 120619
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5264BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33802Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120619CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5264positivegrowth20psychrophilic
33802positivegrowth20psychrophilic
120619positivegrowth5-25psychrophilic
120619nogrowth30mesophilic
120619nogrowth37mesophilic
120619nogrowth41thermophilic
120619nogrowth45thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
120619NaClnogrowth0 %
120619NaClnogrowth2 %
120619NaClnogrowth4 %
120619NaClnogrowth6 %
120619NaClnogrowth8 %
120619NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1206194853esculin-hydrolysis
120619606565hippurate-hydrolysis
12061917632nitrate-reduction
12061916301nitrite-reduction
12061915792malonate-assimilation

metabolite production

  • @ref: 120619
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12061915688acetoin-
12061917234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
120619oxidase-
120619beta-galactosidase-3.2.1.23
120619alcohol dehydrogenase-1.1.1.1
120619gelatinase+
120619amylase-
120619caseinase+3.4.21.50
120619catalase+1.11.1.6
120619tween esterase+
120619gamma-glutamyltransferase-2.3.2.2
120619lecithinase+
120619lipase+
120619lysine decarboxylase-4.1.1.18
120619ornithine decarboxylase-4.1.1.17
120619phenylalanine ammonia-lyase-4.3.1.24
120619tryptophan deaminase-
120619urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120619-+++-++--+++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5264seawaterMertz Polynya, Antarctic coastAntarcticaATAAustralia and Oceania
120619Environment, SeawaterVestfold HillsAntarcticaATAAntarctica2000

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Geologic

taxonmaps

  • @ref: 69479
  • File name: preview.99_65740.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_74;96_182;97_13478;98_16601;99_65740&stattab=map
  • Last taxonomy: Aequorivita lipolytica
  • 16S sequence: AY027805
  • Sequence Identity:
  • Total samples: 29
  • soil counts: 10
  • aquatic counts: 16
  • animal counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
52641Risk group (German classification)
1206191Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Aequorivita lipolytica Y10-2T 16S ribosomal RNA gene, partial sequence
  • accession: AY027805
  • length: 1422
  • database: ena
  • NCBI tax ID: 153267

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aequorivita lipolytica Y10-2GCA_007997135contigncbi153267
66792Aequorivita lipolytica strain Y10-2153267.4wgspatric153267
66792Aequorivita lipolytica strain type strain: CIP107455 strain CIP107455T153267.3wgspatric153267

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno87.409no
gram-positiveno98.749no
anaerobicno98.709no
aerobicyes90.564no
halophileyes64.623no
spore-formingno94.908no
thermophileno99.295yes
glucose-utilyes77.664no
flagellatedno95.504no
glucose-fermentno92.93no

External links

@ref: 5264

culture collection no.: DSM 14236, ACAM 641, CIP 107455, LMG 21430

straininfo link

  • @ref: 74964
  • straininfo: 86432

literature

  • topic: Phylogeny
  • Pubmed-ID: 12361255
  • title: Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats.
  • authors: Bowman JP, Nichols DS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-5-1533
  • year: 2002
  • mesh: Antarctic Regions, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Gram-Negative Aerobic Rods and Cocci/chemistry/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Seawater/microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5264Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14236)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14236
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33802Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4892
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74964Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID86432.1StrainInfo: A central database for resolving microbial strain identifiers
120619Curators of the CIPCollection of Institut Pasteur (CIP 107455)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107455