Name: Marivirga sericea NICMB 1403
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5474

Type strain:

Species: Marivirga sericea

Strain Designation: NICMB 1403, SIO-7

Culture col. no.: DSM 4125, ATCC 23182, LMG 13021, NBRC 15983

Strain history: <- NCMB <- R.A. Lewin, SIO-7 ("Microscilla sericea")

NCBI tax ID(s): 1028 (species)

SI-ID 10157

LMG 13021, ATCC 23182, NCIMB 1403, DSM 4125, NCMB 1403, IFO15983, KCTC 2899, NBRC 15983

Section

Marivirga sericea NICMB 1403 is a mesophilic, Gram-negative bacterium that was isolated from marine aquarium outflow.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Marivirgaceae*
	Genus	*Marivirga*
	Species	**Marivirga sericea**
	Full Scientific Name (LPSN)	Marivirga sericea (ex Lewin 1969) Nedashkovskaya et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.796

[Ref.: #69480]	Motility	no Confidence in %90.978

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1593]

Culture medium

CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172)

[Ref.: #1593]

Culture medium growth

[Ref.: #1593]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1593]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1593]			growth	25 °C

[Ref.: #1593]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.996

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1593]	Sample type/isolated from	marine aquarium outflow
[Ref.: #1593]	Geographic location (country and/or sea, region)	California, La Jolla
[Ref.: #1593]	Country	USA
[Ref.: #1593]	Country ISO 3 Code	USA
[Ref.: #1593]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Engineered	#Waste	#Wastewater
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB078081 (>99% sequence identity) for Marivirga sericea from Microbeatlas

Aquatic Samples	69
Soil Samples	13
Animal Samples	8
Plant Samples	3
Total Samples	93

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1593]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1593]	Microscilla sericea gene for 16S rRNA, strain:IFO 15983	AB078081	1476	ENA	1028 tax ID
[Ref.: #20218]	Microscilla sericea 16S ribosomal RNA	M58794	1496	ENA	1028 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marivirga sericea DSM 4125	GCA_900177665	scaffold	GenBank	1028 tax ID	*
[Ref.: #66792]	Marivirga sericea strain DSM 4125	1028.3	wgs	PATRIC	1028 tax ID	*
[Ref.: #66792]	Marivirga sericea DSM 4125	2595699006	draft	JGI IMG/M	1028 tax ID	*

[Ref.: #1593]	GC-content	37.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #1593]	GC-content	38.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marivirga sericea DSM 4125 NCBI: GCA_900177665.1
[Ref.: #69481]	spore-forming	no	85	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marivirga sericea DSM 4125 NCBI: GCA_900177665.1
[Ref.: #69480]	motile	no	90.272	no
[Ref.: #69480]	flagellated	no	93.917	no
[Ref.: #69480]	gram-positive	no	98.477	no
[Ref.: #69480]	anaerobic	no	98.185	no
[Ref.: #69480]	aerobic	yes	90.907	no
[Ref.: #69480]	halophile	no	59.133	no
[Ref.: #69480]	spore-forming	no	95.166	no
[Ref.: #69480]	glucose-util	yes	81.786	no
[Ref.: #69480]	thermophile	no	98.356	yes
[Ref.: #69480]	glucose-ferment	no	90.561	no

Availability in culture collections External links

[Ref.: #1593]

Culture collection no.

DSM 4125, ATCC 23182, LMG 13021, NBRC 15983

[Ref.: #74962]

SI-ID 10157

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mangrovivirga cuniculi gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family Mangrovivirgaceae fam. nov.	Sefrji FO, Michoud G, Marasco R, Merlino G, Daffonchio D	Int J Syst Evol Microbiol	10.1099/ijsem.0.004866	2021	*
Phylogeny	Reclassification of Flexibacter tractuosus NBRC 15981T as Marivirga harenae sp. nov. in the family Flammeovirgaceae.	Muramatsu Y, Kamakura Y, Takahashi M, Nakagawa Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001890	2017	*
Phylogeny	Marivirga lumbricoides sp. nov., a marine bacterium isolated from the South China Sea.	Xu Y, Zhang R, Li Q, Liu K, Jiao N	Int J Syst Evol Microbiol	10.1099/ijs.0.066027-0	2014	*
Phylogeny	Nafulsella turpanensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil.	Zhang L, Shen X, Liu Y, Li S	Int J Syst Evol Microbiol	10.1099/ijs.0.044651-0	2012	*
Phylogeny	Reclassification of Flexibacter tractuosus (Lewin 1969) Leadbetter 1974 and 'Microscilla sericea' Lewin 1969 in the genus Marivirga gen. nov. as Marivirga tractuosa comb. nov. and Marivirga sericea nom. rev., comb. nov.	Nedashkovskaya OI, Vancanneyt M, Kim SB, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.016121-0	2009	*

References

#1593

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4125

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74962

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10157.1 )

* These data were automatically processed and therefore are not curated

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Marivirga sericea DSM 4125

Marivirga sericea DSM 4125

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