Strain identifier

BacDive ID: 5475

Type strain: Yes

Species: Cesiribacter andamanensis

Strain Designation: AMV16

Strain history: CIP <- 2010, S. Shivaji, CCMB, Hyderabad, India: strain AMV16

NCBI tax ID(s): 649507 (species)

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General

@ref: 16533

BacDive-ID: 5475

DSM-Number: 22818

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Cesiribacter andamanensis AMV16 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from soil from a mud volcano.

NCBI tax id

  • NCBI tax id: 649507
  • Matching level: species

strain history

@refhistory
376882010, S. Shivaji, CCMB, Hyderabad, India: strain AMV16
16533<- S. Shivaji, Centre for Cellular and Molecular Biology, Hyderabad, India; AMV16 <- P. A. Kumar
116376CIP <- 2010, S. Shivaji, CCMB, Hyderabad, India: strain AMV16

doi: 10.13145/bacdive5475.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cesiribacteraceae
  • genus: Cesiribacter
  • species: Cesiribacter andamanensis
  • full scientific name: Cesiribacter andamanensis Srinivas et al. 2011

@ref: 16533

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Flammeovirgaceae

genus: Cesiribacter

species: Cesiribacter andamanensis

full scientific name: Cesiribacter andamanensis Srinivas et al. 2011

strain designation: AMV16

type strain: yes

Morphology

cell morphology

  • @ref: 116376
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37688Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116376CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566
116376CIP Medium 186yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=186
116376CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

  • @ref: 37688
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116376
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11637617632nitrate+reduction
11637616301nitrite+reduction

metabolite production

  • @ref: 116376
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
116376oxidase+
116376catalase+1.11.1.6
116376urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116376-+---++-++----------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
16533soil from a mud volcanoAndaman, Baratang IslandIndiaINDAsia
116376Environment, Soil, mud volcanoBaratung IslandIndiaINDAsia2009

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Terrestrial#Soil
#Environmental#Terrestrial#Volcanic

taxonmaps

  • @ref: 69479
  • File name: preview.99_1069.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_186;96_618;97_721;98_840;99_1069&stattab=map
  • Last taxonomy: Cesiribacter andamanensis subclade
  • 16S sequence: FN396961
  • Sequence Identity:
  • Total samples: 2474
  • soil counts: 253
  • aquatic counts: 279
  • animal counts: 1918
  • plant counts: 24

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165331Risk group (German classification)
1163761Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16533
  • description: Cesiribacter andamanensis partial 16S rRNA gene, strain AMV16
  • accession: FN396961
  • length: 1502
  • database: ena
  • NCBI tax ID: 1279009

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cesiribacter andamanensis AMV16GCA_000348925contigncbi1279009
66792Cesiribacter andamanensis AMV161279009.4wgspatric1279009
66792Cesiribacter andamanensis AMV162529293184draftimg1279009

GC content

  • @ref: 16533
  • GC-content: 50.9
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno88.96no
gram-positiveno96.805no
anaerobicno98.044no
aerobicyes90.49no
halophileno81.835no
spore-formingno94.21no
glucose-utilyes88.168no
flagellatedno95.888no
thermophileno94.396no
glucose-fermentno87.205no

External links

@ref: 16533

culture collection no.: DSM 22818, CCUG 58431, CIP 110152

straininfo link

  • @ref: 74963
  • straininfo: 377746

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20656812Cesiribacter andamanensis gen. nov., sp. nov., isolated from a soil sample from a mud volcano.Srinivas TNR, Anil Kumar P, Madhu S, Sunil B, Sharma TVRS, Shivaji SInt J Syst Evol Microbiol10.1099/ijs.0.025429-02010Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny21335497Cesiribacter roseus sp. nov., a pink-pigmented bacterium isolated from desert sand.Liu M, Qi H, Luo X, Dai J, Peng F, Fang CInt J Syst Evol Microbiol10.1099/ijs.0.028423-02011Aerobiosis, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Fatty Acids/analysis, Locomotion, Molecular Sequence Data, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Silicon Dioxide, *Soil MicrobiologyGenetics
Phylogeny22904215Nafulsella turpanensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil.Zhang L, Shen X, Liu Y, Li SInt J Syst Evol Microbiol10.1099/ijs.0.044651-02012Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, Polyenes/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysisGenetics
Genetics23682146Draft Genome Sequence of Cesiribacter andamanensis Strain AMV16T, Isolated from a Soil Sample from a Mud Volcano in the Andaman Islands, India.Shivaji S, Ara S, Begum Z, Srinivas TN, Singh A, Kumar Pinnaka AGenome Announc10.1128/genomeA.00240-132013Phylogeny

Reference

@idauthorscataloguedoi/urltitle
16533Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22818)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22818
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37688Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7979
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74963Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377746.1StrainInfo: A central database for resolving microbial strain identifiers
116376Curators of the CIPCollection of Institut Pasteur (CIP 110152)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110152