Name: Bavariicoccus seileri DSM 19936
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5363

Type strain:

Species: Bavariicoccus seileri

Culture col. no.: DSM 19936, CCUG 55508, WCC 4188

Strain history: <- S. Scherer and V. Schmidt, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, GERMANY; <- A. Maoz, WCC 4188

NCBI tax ID(s): 1255705 (strain), 549685 (species)

SI-ID 402318

DSM 19936, CCUG 55508

Other strains from Bavariicoccus seileri

B. seileri CCUG 55507
B. seileri CCUG 55509

Section

Bavariicoccus seileri DSM 19936 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from surface and smear water of smear-ripened soft cheeses.

coccus-shaped
Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Enterococcaceae*
	Genus	*Bavariicoccus*
	Species	**Bavariicoccus seileri**
	Full Scientific Name (LPSN)	Bavariicoccus seileri Schmidt et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29114]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29114]	Cell length	1.05 µm

[Ref.: #29114]	Cell width	1.05 µm

[Ref.: #29114]	Cell shape	coccus-shaped

[Ref.: #69480]	Motility	no Confidence in %98.274

Multimedia content

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electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Information on culture and growth conditions Culture and growth conditions

[Ref.: #8396]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #8396]

Culture medium growth

[Ref.: #8396]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8396]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8396]	growth	34 °C
[Ref.: #29114]	growth	10-40 °C
[Ref.: #60620]	growth	37 °C

[Ref.: #8396]	Temperature range	mesophilic
[Ref.: #60620]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29114]			optimum	5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8396]	Oxygen tolerance	anaerobe
[Ref.: #29114]	Oxygen tolerance	facultative anaerobe
[Ref.: #60620]	Oxygen tolerance	microaerophile

[Ref.: #29114]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29114]		NaCl		optimum	11	%

[Ref.: #8396]	Murein short key	A11.31
[Ref.: #8396]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29114]	fructose ChEBI	+	carbon source
[Ref.: #29114]	galactose ChEBI	+	carbon source
[Ref.: #29114]	glucose ChEBI	+	carbon source
[Ref.: #29114]	lactose ChEBI	+	carbon source
[Ref.: #29114]	maltose ChEBI	+	carbon source
[Ref.: #29114]	salicin ChEBI	+	carbon source
[Ref.: #29114]	trehalose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8396]	Sample type/isolated from	surface and smear water of smear-ripened soft cheeses
[Ref.: #8396]	Geographic location (country and/or sea, region)	Bavaria
[Ref.: #8396]	Country	Germany
[Ref.: #8396]	Country ISO 3 Code	DEU
[Ref.: #8396]	Continent	Europe

[Ref.: #60620]	Sample type/isolated from	Surface of mature German red smear soft cheese
[Ref.: #60620]	Sampling date	2000-04-01
[Ref.: #60620]	Geographic location (country and/or sea, region)	Freising
[Ref.: #60620]	Country	Germany
[Ref.: #60620]	Country ISO 3 Code	DEU
[Ref.: #60620]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Dairy product
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FM177901 (>99% sequence identity) for Bavariicoccus seileri subclade from Microbeatlas

Aquatic Samples	1093
Soil Samples	568
Animal Samples	5097
Plant Samples	166
Total Samples	6924

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8396]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8396]	Bavariicoccus seileri partial 16S rRNA gene, type strain WCC 4188T	FM177901	1470	ENA	549685 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bavariicoccus seileri WCC 4188 DSM 19936	GCA_000421665	contig	GenBank	1255705 tax ID	*
[Ref.: #66792]	Bavariicoccus seileri DSM 19936	1121105.4	wgs	PATRIC	1255705 tax ID	*
[Ref.: #66792]	Bavariicoccus seileri WCC 4188, DSM 19936	2523533538	draft	JGI IMG/M	1121105 tax ID	*

[Ref.: #8396]	GC-content	38 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29114]	GC-content	38 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bavariicoccus seileri DSM 19936 PATRIC: 1121105.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bavariicoccus seileri DSM 19936 PATRIC: 1121105.4
[Ref.: #69480]	motile	no	97.561	no
[Ref.: #69480]	flagellated	no	98.671	no
[Ref.: #69480]	gram-positive	yes	96.414	yes
[Ref.: #69480]	anaerobic	no	87.732	no
[Ref.: #69480]	aerobic	no	98.266	no
[Ref.: #69480]	halophile	yes	94.349	yes
[Ref.: #69480]	spore-forming	no	94.761	no
[Ref.: #69480]	thermophile	no	97.637	yes
[Ref.: #69480]	glucose-util	yes	90.282	no
[Ref.: #69480]	glucose-ferment	yes	86.482	no

Availability in culture collections External links

[Ref.: #8396]

Culture collection no.

DSM 19936, CCUG 55508, WCC 4188

[Ref.: #74853]

SI-ID 402318

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bavariicoccus seileri gen. nov., sp. nov., isolated from the surface and smear water of German red smear soft cheese.	Schmidt VS, Mayr R, Wenning M, Glockner J, Busse HJ, Scherer S	Int J Syst Evol Microbiol	10.1099/ijs.0.006601-0	2009	*

References

#8396

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19936

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29114

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25540 (see below)

#60620 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55508

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74853

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402318.1 )

#25540

IJSEM 2437 2009 ( DOI 10.1099/ijs.0.006601-0 , PubMed 19622668 )

* These data were automatically processed and therefore are not curated

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