Strain identifier
BacDive ID: 5363
Type strain: 
Species: Bavariicoccus seileri
Strain history: <- S. Scherer and V. Schmidt, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, GERMANY; <- A. Maoz, WCC 4188
NCBI tax ID(s): 1255705 (strain), 549685 (species)
version 9.1 (current version)
General
@ref: 8396
BacDive-ID: 5363
DSM-Number: 19936
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-positive, coccus-shaped
description: Bavariicoccus seileri DSM 19936 is an anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from surface and smear water of smear-ripened soft cheeses.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1255705 | strain |
| 549685 | species |
strain history
- @ref: 8396
- history: <- S. Scherer and V. Schmidt, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, GERMANY; <- A. Maoz, WCC 4188
doi: 10.13145/bacdive5363.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Enterococcaceae
- genus: Bavariicoccus
- species: Bavariicoccus seileri
- full scientific name: Bavariicoccus seileri Schmidt et al. 2009
@ref: 8396
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Enterococcaceae
genus: Bavariicoccus
species: Bavariicoccus seileri
full scientific name: Bavariicoccus seileri Schmidt et al. 2009
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 29114 | positive | 1.05 µm | 1.05 µm | coccus-shaped | ||
| 69480 | no | 91.5 | ||||
| 69480 | positive | 92.009 |
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_19936_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_19936_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_19936_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_19936_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 8396
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 8396 | positive | growth | 34 |
| 29114 | positive | growth | 10-40 |
| 60620 | positive | growth | 37 |
culture pH
- @ref: 29114
- ability: positive
- type: optimum
- pH: 5.5
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 8396 | anaerobe |
| 29114 | facultative anaerobe |
| 60620 | microaerophile |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29114 | no | |
| 69481 | no | 100 |
halophily
- @ref: 29114
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 11 %
murein
- @ref: 8396
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29114 | 28757 | fructose | + | carbon source |
| 29114 | 28260 | galactose | + | carbon source |
| 29114 | 17234 | glucose | + | carbon source |
| 29114 | 17716 | lactose | + | carbon source |
| 29114 | 17306 | maltose | + | carbon source |
| 29114 | 17814 | salicin | + | carbon source |
| 29114 | 27082 | trehalose | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 8396 | surface and smear water of smear-ripened soft cheeses | Bavaria | Germany | DEU | Europe | |
| 60620 | Surface of mature German red smear soft cheese | Freising | Germany | DEU | Europe | 2000-04-01 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Dairy product |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_118410.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_46814;97_60120;98_79888;99_118410&stattab=map
- Last taxonomy: Bavariicoccus seileri subclade
- 16S sequence: FM177901
- Sequence Identity:
- Total samples: 6924
- soil counts: 568
- aquatic counts: 1093
- animal counts: 5097
- plant counts: 166
Safety information
risk assessment
- @ref: 8396
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8396
- description: Bavariicoccus seileri partial 16S rRNA gene, type strain WCC 4188T
- accession: FM177901
- length: 1470
- database: nuccore
- NCBI tax ID: 549685
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bavariicoccus seileri WCC 4188 DSM 19936 | GCA_000421665 | contig | ncbi | 1255705 |
| 66792 | Bavariicoccus seileri DSM 19936 | 1121105.4 | wgs | patric | 1255705 |
| 66792 | Bavariicoccus seileri WCC 4188, DSM 19936 | 2523533538 | draft | img | 1121105 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 8396 | 38 | high performance liquid chromatography (HPLC) |
| 29114 | 38 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.009 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 81.466 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 84.343 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.376 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.996 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 91.5 | no |
External links
@ref: 8396
culture collection no.: DSM 19936, CCUG 55508, WCC 4188
straininfo link
- @ref: 74853
- straininfo: 402318
literature
- topic: Phylogeny
- Pubmed-ID: 19622668
- title: Bavariicoccus seileri gen. nov., sp. nov., isolated from the surface and smear water of German red smear soft cheese.
- authors: Schmidt VS, Mayr R, Wenning M, Glockner J, Busse HJ, Scherer S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.006601-0
- year: 2009
- mesh: Bacterial Proteins/genetics, Bacterial Typing Techniques, Cheese/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fresh Water/*microbiology, Gram-Positive Cocci/classification/cytology/genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 8396 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19936) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19936 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 29114 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25540 | 28776041 | ||
| 60620 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 55508) | https://www.ccug.se/strain?id=55508 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 28604660 | 35: 676-683 2017 | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 74853 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402318.1 | StrainInfo: A central database for resolving microbial strain identifiers |