Allobaculum stercoricanis 2CLOS2 | Type strain | DSM 13633, CCUG 45212 | BacDiveID:5364

Strain identifier

BacDive ID: 5364

Type strain:

Species: Allobaculum stercoricanis

Strain Designation: 2CLOS2

Culture col. no.: DSM 13633, CCUG 45212

Strain history: <- H. L. Greetham, FMSU, Univ. Reading, Early Gate, United Kingdom; 2CLOS2 <- H. L. Greetham {2000}

NCBI tax ID(s): 1050201 (strain), 174709 (species)

SI-ID 215449

DSM 13633, CCUG 45212

Section

Allobaculum stercoricanis 2CLOS2 is an anaerobe, mesophilic bacterium that was isolated from canine individual .

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Erysipelotrichia*
	Order	*Erysipelotrichales*
	Family	*Erysipelotrichaceae*
	Genus	*Allobaculum*
	Species	**Allobaculum stercoricanis**
	Full Scientific Name (LPSN)	Allobaculum stercoricanis Greetham et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.549

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5025]			growth	37 °C
[Ref.: #56694]			growth	37 °C

[Ref.: #5025]	Temperature range	mesophilic
[Ref.: #56694]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5025]	Oxygen tolerance	anaerobe
[Ref.: #56694]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.969

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5025]	Sample type/isolated from	canine individual (gutbacteria)
[Ref.: #5025]	Country	United Kingdom
[Ref.: #5025]	Country ISO 3 Code	GBR
[Ref.: #5025]	Continent	Europe

[Ref.: #56694]	Sample type/isolated from	Dog feces,male Labrador
[Ref.: #56694]	Geographic location (country and/or sea, region)	Reading
[Ref.: #56694]	Country	United Kingdom
[Ref.: #56694]	Country ISO 3 Code	GBR
[Ref.: #56694]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host	#Microbial	#Bacteria
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

Global distribution of 16S sequence AJ417075 (>99% sequence identity) for Allobaculum stercoricanis subclade from Microbeatlas

Aquatic Samples	409
Soil Samples	154
Animal Samples	14468
Plant Samples	33
Total Samples	15064

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5025]	Allobaculum stercoricanis 16S rRNA gene, type strain DSM 13633T	AJ417075	1479	ENA	1050201 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Allobaculum stercoricanis DSM 13633	GCA_000384195	scaffold	GenBank	1050201 tax ID	*
[Ref.: #66792]	Allobaculum stercoricanis DSM 13633	1050201.52	wgs	PATRIC	1050201 tax ID	*
[Ref.: #66792]	Allobaculum stercoricanis DSM 13633	2516493028	draft	JGI IMG/M	1050201 tax ID	*

GC-content

37.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Allobaculum stercoricanis DSM 13633 DSM 13633 NCBI: GCA_000384195.1
[Ref.: #69481]	spore-forming	no	59	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Allobaculum stercoricanis DSM 13633 DSM 13633 NCBI: GCA_000384195.1
[Ref.: #69480]	motile	no	96.157	no
[Ref.: #69480]	flagellated	no	97.446	no
[Ref.: #69480]	gram-positive	yes	95.761	no
[Ref.: #69480]	anaerobic	yes	98.091	no
[Ref.: #69480]	aerobic	no	98.894	no
[Ref.: #69480]	halophile	yes	53.516	no
[Ref.: #69480]	spore-forming	no	92.94	no
[Ref.: #69480]	thermophile	no	99.802	yes
[Ref.: #69480]	glucose-util	yes	88.259	no
[Ref.: #69480]	glucose-ferment	yes	77.671	no

Availability in culture collections External links

Culture collection no.

DSM 13633, CCUG 45212

SI-ID 215449

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole genome sequencing of "Faecalibaculum rodentium" ALO17, isolated from C57BL/6J laboratory mouse feces.	Lim S, Chang DH, Ahn S, Kim BC	Gut Pathog	10.1186/s13099-016-0087-3	2016	*
Phylogeny	Faecalibaculum rodentium gen. nov., sp. nov., isolated from the faeces of a laboratory mouse.	Chang DH, Rhee MS, Ahn S, Bang BH, Oh JE, Lee HK, Kim BC	Antonie Van Leeuwenhoek	10.1007/s10482-015-0583-3	2015	*
Phylogeny	Allobaculum stercoricanis gen. nov., sp. nov., isolated from canine feces.	Greetham HL, Gibson GR, Giffard C, Hippe H, Merkhoffer B, Steiner U, Falsen E, Collins MD	Anaerobe	10.1016/j.anaerobe.2004.06.004	2004	*

References

#5025

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13633

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#56694 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45212

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74854

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215449.1 )

* These data were automatically processed and therefore are not curated

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