Strain identifier
BacDive ID: 5364
Type strain: 
Species: Allobaculum stercoricanis
Strain Designation: 2CLOS2
Strain history: <- H. L. Greetham, FMSU, Univ. Reading, Early Gate, United Kingdom; 2CLOS2 <- H. L. Greetham {2000}
NCBI tax ID(s): 1050201 (strain), 174709 (species)
version 8.1 (current version)
General
@ref: 5025
BacDive-ID: 5364
DSM-Number: 13633
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Allobaculum stercoricanis 2CLOS2 is an anaerobe, mesophilic bacterium that was isolated from canine individual .
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1050201 | strain |
| 174709 | species |
strain history
- @ref: 5025
- history: <- H. L. Greetham, FMSU, Univ. Reading, Early Gate, United Kingdom; 2CLOS2 <- H. L. Greetham {2000}
doi: 10.13145/bacdive5364.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Erysipelotrichia
- order: Erysipelotrichales
- family: Erysipelotrichaceae
- genus: Allobaculum
- species: Allobaculum stercoricanis
- full scientific name: Allobaculum stercoricanis Greetham et al. 2006
@ref: 5025
domain: Bacteria
phylum: Firmicutes
class: Erysipelotrichia
order: Erysipelotrichales
family: Erysipelotrichaceae
genus: Allobaculum
species: Allobaculum stercoricanis
full scientific name: Allobaculum stercoricanis Greetham et al. 2006
strain designation: 2CLOS2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.549 | |
| 69480 | 100 | positive |
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_13633_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_13633_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_13633_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_13633_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_13633_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5025 | CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) | yes | https://mediadive.dsmz.de/medium/110a | Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water |
| 5025 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5025 | positive | growth | 37 | mesophilic |
| 56694 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 5025 | anaerobe | |
| 56694 | anaerobe | |
| 69480 | anaerobe | 98.969 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 5025 | canine individual (gutbacteria) | United Kingdom | GBR | Europe | |
| 56694 | Dog feces,male Labrador | United Kingdom | GBR | Europe | Reading |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Canidae (Dog) |
| #Host | #Microbial | #Bacteria |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
taxonmaps
- @ref: 69479
- File name: preview.99_5850.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_543;96_2805;97_3445;98_4351;99_5850&stattab=map
- Last taxonomy: Allobaculum stercoricanis subclade
- 16S sequence: AJ417075
- Sequence Identity:
- Total samples: 15064
- soil counts: 154
- aquatic counts: 409
- animal counts: 14468
- plant counts: 33
Safety information
risk assessment
- @ref: 5025
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5025
- description: Allobaculum stercoricanis 16S rRNA gene, type strain DSM 13633T
- accession: AJ417075
- length: 1479
- database: ena
- NCBI tax ID: 1050201
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Allobaculum stercoricanis DSM 13633 | GCA_000384195 | scaffold | ncbi | 1050201 |
| 66792 | Allobaculum stercoricanis DSM 13633 | 1050201.52 | wgs | patric | 1050201 |
| 66792 | Allobaculum stercoricanis DSM 13633 | 2516493028 | draft | img | 1050201 |
GC content
- @ref: 5025
- GC-content: 37.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 59 | no |
| motile | no | 96.157 | no |
| flagellated | no | 97.446 | no |
| gram-positive | yes | 95.761 | no |
| anaerobic | yes | 98.091 | no |
| aerobic | no | 98.894 | no |
| halophile | yes | 53.516 | no |
| spore-forming | no | 92.94 | no |
| thermophile | no | 99.802 | yes |
| glucose-util | yes | 88.259 | no |
| glucose-ferment | yes | 77.671 | no |
External links
@ref: 5025
culture collection no.: DSM 13633, CCUG 45212
straininfo link
- @ref: 74854
- straininfo: 215449
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16701531 | Allobaculum stercoricanis gen. nov., sp. nov., isolated from canine feces. | Greetham HL, Gibson GR, Giffard C, Hippe H, Merkhoffer B, Steiner U, Falsen E, Collins MD | Anaerobe | 10.1016/j.anaerobe.2004.06.004 | 2004 | ||
| Phylogeny | 26349481 | Faecalibaculum rodentium gen. nov., sp. nov., isolated from the faeces of a laboratory mouse. | Chang DH, Rhee MS, Ahn S, Bang BH, Oh JE, Lee HK, Kim BC | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0583-3 | 2015 | Anaerobiosis, Animals, Base Composition, Carbohydrates/analysis, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Feces/*microbiology, Firmicutes/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Lactic Acid/metabolism, Mice, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Metabolism |
| Genetics | 26877770 | Whole genome sequencing of "Faecalibaculum rodentium" ALO17, isolated from C57BL/6J laboratory mouse feces. | Lim S, Chang DH, Ahn S, Kim BC | Gut Pathog | 10.1186/s13099-016-0087-3 | 2016 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5025 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13633) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13633 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 56694 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 45212) | https://www.ccug.se/strain?id=45212 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 74854 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID215449.1 | StrainInfo: A central database for resolving microbial strain identifiers |