Proteus vulgaris (DSM 46228, IMET 10764, SG 2)

Name: Proteus vulgaris (DSM 46228, IMET 10764, SG 2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5070

Type strain

Strain Designation Ox 19

Culture col. no. DSM 46228 IMET 10764 SG 2 Ox 19

NCBI tax ID(s) 585

Special Collections DSMZ

History <- IMET; IMET 10764 <- Institut for experimental Therapy, Frankfurt/Main; Ox 19

Links

Proteus vulgaris Ox 19 is a mesophilic prokaryote of the family Morganellaceae.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 50787

DSM 46228,IMET 10764

@ref 20215

Last LPSN update 2026-02-09 11:18:52

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Morganellaceae

Genus Proteus

Species Proteus vulgaris

Full scientific name Proteus vulgaris Hauser 1885 (Approved Lists 1980)

BacDive ID	Other strains from **Proteus vulgaris** (36)	Type strain
5069	P. vulgaris PR 1, DSM 13387, ATCC 29905, CDC PR1, CIP ... (type strain)
5066	P. vulgaris DSM 2140, ATCC 8427
5067	P. vulgaris KS, DSM 3265, IFO 3045, NBRC 3045
5068	P. vulgaris DSM 13625, IMI 358534
131880	P. vulgaris 65490/2016, DSM 103498
134601	P. vulgaris OX19, CIP 54.160, NCTC 8313, NCIMB 8261, ...
134602	P. vulgaris OX2, CIP 54.161, NCTC 8311, NCIMB 8259
135462	P. vulgaris 122-86, CIP 102184
135806	P. vulgaris X19 Syrie, CIP A244, CCUG 1644, CCM 1956, ...
137326	P. vulgaris OXL, CIP 54.162, NCTC 4635, NCIMB 11833, ...
137640	P. vulgaris CIP 103558, ATCC 49132
138464	P. vulgaris CIP A232
141245	P. vulgaris CCUG 376
141664	P. vulgaris CCUG 4635, CCUG 18983
141665	P. vulgaris CCUG 4636, CCUG 18985
141667	P. vulgaris CCUG 4639, CCUG 18991
141671	P. vulgaris CCUG 4643
141675	P. vulgaris CCUG 4647, CCUG 19002
141678	P. vulgaris CCUG 4650, CCUG 2148
141679	P. vulgaris CCUG 4654, CCUG 19012
141680	P. vulgaris CCUG 4660
141681	P. vulgaris CCUG 4678, CCUG 19034
141682	P. vulgaris CCUG 4679, CCUG 2150
141683	P. vulgaris CCUG 4682, CCUG 19037
143410	P. vulgaris CCUG 18984
143411	P. vulgaris CCUG 18986
143415	P. vulgaris CCUG 19017
143416	P. vulgaris CCUG 19036, CCUG 4681
146586	P. vulgaris CCUG 31523
148403	P. vulgaris 87B, 8390-93, CCUG 35381, ATCC 51471, CIP ...
148404	P. vulgaris 8385-93, 111B, CCUG 35384, ATCC 51469, CIP ...
148405	P. vulgaris HSCT 3586 T1, 1404-81, CCUG 35385, ATCC 51470, ...
149464	P. vulgaris CCUG 37793
150580	P. vulgaris CCUG 41652
162692	P. vulgaris JCM 20013, IAM 1025
162884	P. vulgaris JCM 20339, IAM 12003, RIMD 1643005

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.3
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12489	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
12489	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12489	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.3

Spore formation

@ref	Spore formation	Confidence
125439		97.4

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68368	15688 ChEBI	acetoin		from API 20E
68368	16136 ChEBI	hydrogen sulfide		from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68368	15688 ChEBI	acetoin	-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
12489	-	-	-	-	+	+	+	+	not determinedn.d.	-	-	+	-	-	-	-	+	-	+	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12489	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	Proteus vulgaris strain FDAARGOS_1507	complete		585.138	585	99.53
66792	Proteus vulgaris strain FDAARGOS_1507	complete		585.135	585	99.53
66792	Proteus vulgaris strain FDAARGOS_1507	complete		585.136	585	99.53
124043	ASM2009735v1 assembly for Proteus vulgaris FDAARGOS_1507	complete	GCA_020097355	585.130	585	89.83

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Proteus vulgaris strain FDAARGOS_1507
PATRIC: 585.138

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.40	no
125439	motility	BacteriaNetⓘ	no	53.10	no
125439	gram_stain	BacteriaNetⓘ	negative	95.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Proteus vulgaris strain FDAARGOS_1507 strain Not applicable
PATRIC: 585.130

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	91.45	no
125438	spore-forming	spore-formingⓘ	no	89.23	no
125438	aerobic	aerobicⓘ	no	76.79	no
125438	thermophilic	thermophileⓘ	no	98.45	yes
125438	flagellated	motile2+ⓘ	yes	74.81	no

Literature

Title	Authors	Journal	DOI	Year
A One-Pot Convenient RPA-CRISPR-Based Assay for Salmonella enterica Serovar Indiana Detection.	Gong J, Zhang D, Fu L, Dong Y, Wu K, Dou X, Wang C.	Microorganisms	10.3390/microorganisms12030519	2024
Screening, fermentation, isolation, and chracterization of trypanomycin, a new antibiotic.	Fleck W, Strauss D, Schonfeld C, Jungstand W, Seeber C, Prauser H.	Antimicrob Agents Chemother	10.1128/aac.1.5.385	1972

References

#12489	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46228
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Proteus vulgaris (DSM 46228, IMET 10764, SG 2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_020097355

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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