Proteus vulgaris CIP 103558 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from Human, Lochia.
Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Morganellaceae |
| Genus Proteus |
| Species Proteus vulgaris |
| Full scientific name Proteus vulgaris Hauser 1885 (Approved Lists 1980) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 38455 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 38455 | CIP Medium 72 | Medium recipe at CIP | |||
| 38455 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 38455 | positive | growth | 30 | mesophilic |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 98.5 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | + | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 38455 | 17632 ChEBI | nitrate | + | reduction | |
| 38455 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | + | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 38455 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 38455 | oxidase | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 38455 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38455 | not determinedn.d. | + | - | + | - | + | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | + | - | + | + | + | - | + | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - |
| 38455 | Sample typeHuman, Lochia |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 38455 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | PVA assembly for Proteus vulgaris ATCC 49132 | scaffold | 585 | 70.65 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.50 | no |
| 125439 | motility | BacteriaNetⓘ | no | 50.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.99 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 91.76 | yes |
| 125438 | aerobic | aerobicⓘ | no | 78.02 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 88.73 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.45 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.31 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Unlocking Reishi's secrets: nutritional and medicinal traits of Ganoderma lucidum isolated from tree bark in Egypt. | Shady RM, El-Gayar MH, El-Gebaly E, Abbass HS, Yassein MA. | AMB Express | 10.1186/s13568-025-01905-6 | 2025 | ||
| Antimicrobial Activity of Bacillus amyloliquefaciens BS4 against Gram-Negative Pathogenic Bacteria. | Palacios-Rodriguez AP, Espinoza-Culupu A, Duran Y, Sanchez-Rojas T. | Antibiotics (Basel) | 10.3390/antibiotics13040304 | 2024 | ||
| Design of Potent and Salt-Insensitive Antimicrobial Branched Peptides. | To J, Zhang X, Tam JP. | Polymers (Basel) | 10.3390/polym15173594 | 2023 | ||
| Testing of Anti-EMT, Anti-Inflammatory and Antibacterial Activities of 2',4'-Dimethoxychalcone. | Zhao P, Xu M, Gong K, Lu K, Ruan C, Yu X, Zhu J, Guan H, Zhu Q. | Pharmaceuticals (Basel) | 10.3390/ph17050653 | 2024 | ||
| In Vitro Pharmacological Activity, and Comparison GC-ToF-MS Profiling of Extracts from Cissus cornifolia (Baker) Planch. | Mongalo NI, Raletsena MV, Munyai R. | Life (Basel) | 10.3390/life13030728 | 2023 | ||
| Characterization of Endophytic Streptomyces griseorubens MPT42 and Assessment of Antimicrobial Synergistic Interactions of its Extract and Essential Oil from Host Plant Litsea cubeba. | Nguyen QH, Nguyen HV, Vu TH, Chu-Ky S, Vu TT, Hoang H, Quach NT, Bui TL, Chu HH, Khieu TN, Sarter S, Li WJ, Phi QT. | Antibiotics (Basel) | 10.3390/antibiotics8040197 | 2019 | ||
| Comprehensive investigation of Litsea cubeba antibacterial and antifungal activities across solid, liquid, and vapor phases against key human pathogens. | Sreepian PM, Popruk S, Rattanasinganchan P, Sreepian A. | Narra J | 10.52225/narra.v5i1.1685 | 2025 | ||
| Green synthesis of silver nanoparticles using Citrus limon peels and evaluation of their antibacterial and cytotoxic properties. | Alkhulaifi MM, Alshehri JH, Alwehaibi MA, Awad MA, Al-Enazi NM, Aldosari NS, Hatamleh AA, Abdel-Raouf N. | Saudi J Biol Sci | 10.1016/j.sjbs.2020.09.031 | 2020 | ||
| Traditional Uses, Phytochemistry, and Bioactivities of Mesosphaerum suaveolens (L.) Kuntze. | Almeida-Bezerra JW, Rodrigues FC, Lima Bezerra JJ, Vieira Pinheiro AA, Almeida de Menezes S, Tavares AB, Costa AR, Augusta de Sousa Fernandes P, Bezerra da Silva V, Martins da Costa JG, Pereira da Cruz R, Bezerra Morais-Braga MF, Melo Coutinho HD, Teixeira de Albergaria E, Meiado MV, Siyadatpanah A, Kim B, Morais de Oliveira AF. | Evid Based Complement Alternat Med | 10.1155/2022/3829180 | 2022 | ||
| Genomic Characterization of a Proteus sp. Strain of Animal Origin Co-Carrying blaNDM-1 and lnu(G). | Li Y, Qiu Y, She J, Wang X, Dai X, Zhang L. | Antibiotics (Basel) | 10.3390/antibiotics10111411 | 2021 | ||
| Plant-derived bioactive compounds produced by Streptomyces variabilis LCP18 associated with Litsea cubeba (Lour.) Pers as potential target to combat human pathogenic bacteria and human cancer cell lines. | Quach NT, Nguyen QH, Vu THN, Le TTH, Ta TTT, Nguyen TD, Van Doan T, Van Nguyen T, Dang TT, Nguyen XC, Chu HH, Phi QT. | Braz J Microbiol | 10.1007/s42770-021-00510-6 | 2021 | ||
| Antibacterial efficiency of the Sudanese Roselle (Hibiscus sabdariffa L.), a famous beverage from Sudanese folk medicine. | Abdallah EM. | J Intercult Ethnopharmacol | 10.5455/jice.20160320022623 | 2016 | ||
| Bifunctional Double-Salt Ionic Liquids Containing both 4-Chloro-2-Methylphenoxyacetate and l-Tryptophanate Anions with Herbicidal and Antimicrobial Activity. | Szymaniak D, Ciarka K, Marcinkowska K, Praczyk T, Gwiazdowska D, Marchwinska K, Walkiewicz F, Pernak J. | ACS Omega | 10.1021/acsomega.1c05048 | 2021 | ||
| Pathogenicity | In Vitro and In Vivo Activities of DS86760016, a Novel Leucyl-tRNA Synthetase Inhibitor for Gram-Negative Pathogens. | Purnapatre KP, Rao M, Pandya M, Khanna A, Chaira T, Bambal R, Upadhyay DJ, Masuda N. | Antimicrob Agents Chemother | 10.1128/aac.01987-17 | 2018 | |
| A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria. | Chakravorty S, Helb D, Burday M, Connell N, Alland D. | J Microbiol Methods | 10.1016/j.mimet.2007.02.005 | 2007 | ||
| In vitro antibacterial and cytotoxic activity of leaf extracts of Centella asiatica (L.) Urb, Warburgia salutaris (Bertol. F.) Chiov and Curtisia dentata (Burm. F.) C.A.Sm - medicinal plants used in South Africa. | Soyingbe OS, Mongalo NI, Makhafola TJ. | BMC Complement Altern Med | 10.1186/s12906-018-2378-3 | 2018 | ||
| Phylogeny | Antimicrobial potential of Actinomycetes species isolated from marine environment. | Valli S, Suvathi SS, Aysha OS, Nirmala P, Vinoth KP, Reena A. | Asian Pac J Trop Biomed | 10.1016/s2221-1691(12)60078-1 | 2012 | |
| Short alkylated peptoid mimics of antimicrobial lipopeptides. | Chongsiriwatana NP, Miller TM, Wetzler M, Vakulenko S, Karlsson AJ, Palecek SP, Mobashery S, Barron AE. | Antimicrob Agents Chemother | 10.1128/aac.01080-10 | 2011 | ||
| Metabolism | Multivalent dendritic molecules as broad spectrum bacteria agglutination agents. | Xiao S, Abu-Esba L, Turkyilmaz S, White AG, Smith BD. | Theranostics | 10.7150/thno.6811 | 2013 | |
| Assessment of total phenolic, antioxidant, and antibacterial activities of Passiflora species. | Ramaiya SD, Bujang JS, Zakaria MH. | ScientificWorldJournal | 10.1155/2014/167309 | 2014 | ||
| Phylogeny | Multicenter evaluation of the MicroScan Rapid Gram-Negative Identification Type 3 Panel. | Bascomb S, Abbott SL, Bobolis JD, Bruckner DA, Connell SJ, Cullen SK, Daugherty M, Glenn D, Janda JM, Lentsch SJ, Lindquist D, Mayhew PB, Nothaft DM, Skinner JR, Williams GB, Wong J, Zimmer BL. | J Clin Microbiol | 10.1128/jcm.35.10.2531-2536.1997 | 1997 | |
| Phylogeny | Evaluation of Luminex xTAG fungal analyte-specific reagents for rapid identification of clinically relevant fungi. | Babady NE, Miranda E, Gilhuley KA. | J Clin Microbiol | 10.1128/jcm.01135-11 | 2011 | |
| Ionic Liquids-A Review of Their Toxicity to Living Organisms. | Goncalves ARP, Paredes X, Cristino AF, Santos FJV, Queiros CSGP. | Int J Mol Sci | 10.3390/ijms22115612 | 2021 | ||
| Identification, cloning, and expression of the Escherichia coli pyrazinamidase and nicotinamidase gene, pncA. | Frothingham R, Meeker-O'Connell WA, Talbot EA, George JW, Kreuzer KN. | Antimicrob Agents Chemother | 10.1128/aac.40.6.1426 | 1996 | ||
| Phylogeny | Francisella tularensis molecular typing using differential insertion sequence amplification. | Larson MA, Fey PD, Bartling AM, Iwen PC, Dempsey MP, Francesconi SC, Hinrichs SH. | J Clin Microbiol | 10.1128/jcm.00033-11 | 2011 | |
| Enzymology | Optical imaging of bacterial infection in living mice using deep-red fluorescent squaraine rotaxane probes. | White AG, Fu N, Leevy WM, Lee JJ, Blasco MA, Smith BD. | Bioconjug Chem | 10.1021/bc1000998 | 2010 | |
| Enzymology | Isolation, identification, and molecular characterization of strains of Photorhabdus luminescens from infected humans in Australia. | Peel MM, Alfredson DA, Gerrard JG, Davis JM, Robson JM, McDougall RJ, Scullie BL, Akhurst RJ. | J Clin Microbiol | 10.1128/jcm.37.11.3647-3653.1999 | 1999 | |
| An unusual structural motif of antimicrobial peptides containing end-to-end macrocycle and cystine-knot disulfides. | Tam JP, Lu YA, Yang JL, Chiu KW. | Proc Natl Acad Sci U S A | 10.1073/pnas.96.16.8913 | 1999 | ||
| Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132. | Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL | Genome Announc | 10.1128/genomeA.01064-14 | 2014 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #38455 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103558 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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