Strain identifier

BacDive ID: 5070

Type strain: No

Species: Proteus vulgaris

Strain Designation: Ox 19

Strain history: <- IMET; IMET 10764 <- Institut for experimental Therapy, Frankfurt/Main; Ox 19

NCBI tax ID(s): 585 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 12489

BacDive-ID: 5070

DSM-Number: 46228

keywords: genome sequence, Bacteria, mesophilic, motile

description: Proteus vulgaris Ox 19 is a mesophilic, motile bacterium of the family Morganellaceae.

NCBI tax id

  • NCBI tax id: 585
  • Matching level: species

strain history

  • @ref: 12489
  • history: <- IMET; IMET 10764 <- Institut for experimental Therapy, Frankfurt/Main; Ox 19

doi: 10.13145/bacdive5070.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus vulgaris
  • full scientific name: Proteus vulgaris Hauser 1885 (Approved Lists 1980)

@ref: 12489

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Proteus

species: Proteus vulgaris

full scientific name: Proteus vulgaris Hauser 1885 emend. Judicial Commission 1999

strain designation: Ox 19

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.788
6948099.953negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12489COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
12489TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 12489
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.658

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836816136hydrogen sulfideyes

metabolite tests

  • @ref: 68368
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpVPGELGLUMANINOSorRHASACMELAMYARAOX
12489----++++--+----+-+--

Safety information

risk assessment

  • @ref: 12489
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Proteus vulgaris strain FDAARGOS_1507585.130completepatric585
66792Proteus vulgaris strain FDAARGOS_1507585.138completepatric585
66792Proteus vulgaris strain FDAARGOS_1507585.135completepatric585
66792Proteus vulgaris strain FDAARGOS_1507585.136completepatric585

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.773no
anaerobicno96.748no
halophileno90.945no
spore-formingno96.334no
glucose-utilyes90.777no
thermophileno98.784yes
flagellatedyes76.643no
aerobicno54.199no
motileyes89.215no
glucose-fermentyes89.434yes

External links

@ref: 12489

culture collection no.: DSM 46228, IMET 10764, SG 2

straininfo link

  • @ref: 74565
  • straininfo: 50787

Reference

@idauthorscataloguedoi/urltitle
12489Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46228)https://www.dsmz.de/collection/catalogue/details/culture/DSM-46228
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74565Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50787.1StrainInfo: A central database for resolving microbial strain identifiers