Pectobacterium carotovorum (DSM 30169, DSM 60109, IX B)

Name: Pectobacterium carotovorum (DSM 30169, DSM 60109, IX B)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5023

Type strain

Strain Designation IX B

Culture col. no. DSM 30169 DSM 60109 IX B

NCBI tax ID(s) 554

Special Collections DSMZ

Links

Pectobacterium carotovorum IX B is a mesophilic plant pathogen that was isolated from Brassica oleracea var. capitata, soft rot.

mesophilic plant pathogen genome sequence

Name and taxonomic classification

SI-ID 49701

DSM 30169,KACC 10804,DSM 60109

@ref 20215

Last LPSN update 2025-12-16 09:47:58

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Pectobacteriaceae

Genus Pectobacterium

Species Pectobacterium carotovorum

Full scientific name Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980)

Synonyms (2)

"Bacillus carotovorus"
Erwinia carotovora

BacDive ID	Other strains from **Pectobacterium carotovorum** (14)	Type strain
5022	P. carotovorum BS 1008, 904, type 32011, DSM 30168, ATCC ... (type strain)
5024	P. carotovorum 39-1/1, DSM 30170, DSM 60337
130953	P. carotovorum C3, DSM 23893
130952	P. carotovorum A6.2, DSM 23891
130951	P. carotovorum C364.2, DSM 23890
130950	P. carotovorum C267, DSM 23897
130949	P. carotovorum C150, DSM 23894
23006	P. carotovorum BPBB 8, Ecbr 8, DSM 14774, ATCC BAA-416
23007	P. carotovorum BPBB 212, Ecbr 212, DSM 14775, ATCC BAA-417
23008	P. carotovorum BPBB 213, Ecbr 213, DSM 14776, ATCC BAA-418
23009	P. carotovorum BCBB 371, Ecbr 371, DSM 14777, ATCC BAA-419
131038	P. carotovorum A45, DSM 23892
131829	P. carotovorum AGES769/14-A2, DSM 102074
157687	P. carotovorum BL19-1-37, DSM 108906

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9178	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9178	positive	growth	26	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Decomposing plant
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species
9178	Brassica oleracea var. capitata, soft rot	Brassica oleracea var. capitata

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
9178		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1821936v1 assembly for Pectobacterium versatile DSM 30169	chromosome	GCA_018219365	2488639.45	2488639	88.43

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pectobacterium versatile strain DSM 30169
PATRIC: 2488639.45

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	94.92	no
125438	spore-forming	spore-formingⓘ	no	88.69	no
125438	aerobic	aerobicⓘ	no	74.83	no
125438	thermophilic	thermophileⓘ	no	98.08	yes
125438	flagellated	motile2+ⓘ	yes	82.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Phylogeographic Analysis of Soft-Rot-Causing Pectobacterium spp. Strains Obtained from Cabbage in Serbia.	Jelusic A, Scortichini M, Markovic S, Mitrovic P, Ilicic R, Stankovic S, Popovic Milovanovic T.	Microorganisms	10.3390/microorganisms11082122	2023
	Diversity of Bacterial Soft Rot-Causing Pectobacterium Species Affecting Cabbage in Serbia.	Jelusic A, Mitrovic P, Markovic S, Ilicic R, Milovanovic P, Stankovic S, Popovic Milovanovic T.	Microorganisms	10.3390/microorganisms11020335	2023
Phylogeny	Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus'.	Buttimer C, Lucid A, Neve H, Franz CMAP, O'Mahony J, Turner D, Lavigne R, Coffey A.	Viruses	10.3390/v10080394	2018
Genetics	Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB.	Buttimer C, Hendrix H, Oliveira H, Casey A, Neve H, McAuliffe O, Ross RP, Hill C, Noben JP, O'Mahony J, Lavigne R, Coffey A.	Front Microbiol	10.3389/fmicb.2017.00044	2017
	Anaerobic Nitrate Respiration by Erwinia carotovora subsp. atroseptica during Potato Tuber Invasion.	Smid EJ, Jansen AH, Tuijn CJ.	Appl Environ Microbiol	10.1128/aem.59.11.3648-3653.1993	1993

References

#9178	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30169
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pectobacterium carotovorum (DSM 30169, DSM 60109, IX B)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_018219365

Genome-based predictions

Predictions

Literature

Literature

References

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