Pectobacterium carotovorum (DSM 102074, AGES769/14-A2)

Name: Pectobacterium carotovorum (DSM 102074, AGES769/14-A2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131829

Type strain

Strain Designation AGES769/14-A2

Culture col. no. DSM 102074 AGES769/14-A2

NCBI tax ID(s) 554

Special Collections DSMZ

Links

Pectobacterium carotovorum AGES769/14-A2 is a mesophilic plant pathogen that was isolated from pulp of Styrian oil pumpkin with soft rot symptoms.

mesophilic plant pathogen

Name and taxonomic classification

SI-ID 400140

DSM 102074

@ref 20215

Last LPSN update 2025-12-16 10:01:21

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Pectobacteriaceae

Genus Pectobacterium

Species Pectobacterium carotovorum

Full scientific name Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980)

Synonyms (2)

"Bacillus carotovorus"
Erwinia carotovora

BacDive ID	Other strains from **Pectobacterium carotovorum** (14)	Type strain
5022	P. carotovorum BS 1008, 904, type 32011, DSM 30168, ATCC ... (type strain)
5023	P. carotovorum IX B, DSM 30169, DSM 60109
5024	P. carotovorum 39-1/1, DSM 30170, DSM 60337
130953	P. carotovorum C3, DSM 23893
130952	P. carotovorum A6.2, DSM 23891
130951	P. carotovorum C364.2, DSM 23890
130950	P. carotovorum C267, DSM 23897
130949	P. carotovorum C150, DSM 23894
23006	P. carotovorum BPBB 8, Ecbr 8, DSM 14774, ATCC BAA-416
23007	P. carotovorum BPBB 212, Ecbr 212, DSM 14775, ATCC BAA-417
23008	P. carotovorum BPBB 213, Ecbr 213, DSM 14776, ATCC BAA-418
23009	P. carotovorum BCBB 371, Ecbr 371, DSM 14777, ATCC BAA-419
131038	P. carotovorum A45, DSM 23892
157687	P. carotovorum BL19-1-37, DSM 108906

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23622	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23622	positive	growth	28	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
23622	+	-	-	-	+	-	-	-	+	+	+	+	+	+	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Plants	#Decomposing plant
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23622	pulp of Styrian oil pumpkin (Cucurbita pepo subsp. pepo var. styriaca) with soft rot symptoms	Cucurbita pepo subsp. pepo	Hainersdorf, Styria	Austria	AUT	Europe	47.1131	15.9464 47.1131/15.9464

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
23622		1	Risk group (German classification)

Sequence information

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Polyphenols, Antioxidant, Antibacterial, and Biofilm Inhibitory Activities of Peel and Pulp of Citrus medica L., Citrus bergamia, and Citrus medica cv. Salò Cultivated in Southern Italy.	Fratianni F, Cozzolino A, De Feo V, Coppola R, Ombra MN, Nazzaro F.	Molecules	10.3390/molecules24244577	2019
	Chemical Composition and Biological Activities of the Essential Oils of Leptospermum petersonii and Eucalyptus gunnii.	Caputo L, Smeriglio A, Trombetta D, Cornara L, Trevena G, Valussi M, Fratianni F, De Feo V, Nazzaro F.	Front Microbiol	10.3389/fmicb.2020.00409	2020
Pathogenicity	Chemical Characterization and Antibiofilm Activities of Bulbs and Leaves of Two Aglione (Allium ampeloprasum var. holmense Asch. et Graebn.) Landraces Grown in Southern Italy.	Caputo L, Amato G, Fratianni F, Coppola R, Candido V, De Feo V, Nazzaro F.	Molecules	10.3390/molecules25235486	2020
Metabolism	Chemical composition, antibiofilm, cytotoxic, and anti-acetylcholinesterase activities of Myrtus communis L. leaves essential oil.	Caputo L, Capozzolo F, Amato G, De Feo V, Fratianni F, Vivenzio G, Nazzaro F.	BMC Complement Med Ther	10.1186/s12906-022-03583-4	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23622	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102074
#68368	Automatically annotated from API 20E .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pectobacterium carotovorum (DSM 102074, AGES769/14-A2)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome-based predictions

Literature

Literature

References

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