Information on genomic background e.g. entries in nucleic sequence databass Sequence information
16S Sequence information:
Only first 5 entries are displayed. Click here to see all. Click here to see only first 5 entries.
Sequence accession description
Seq. accession number
Sequence length (bp)
Sequence database
Associated NCBI tax ID
[Ref.: #20218]
Pectobacterium carotovorum subsp. carotovorum gene for 16S ribosomal RNA, partial sequence, strain: ATCC15713
AB242908
1110
555 tax ID
*
[Ref.: #20218]
Pectobacterium carotovorum subsp. carotovorum strain ATCC 15713 16S-23S intergenic spacer region and tRNA-Glu gene, complete sequence
AF232684
451
555 tax ID
*
[Ref.: #20218]
Pectobacterium carotovorum subsp. carotovorum strain ATCC 15713 16S ribosomal RNA gene, partial sequence
EU490608
1223
555 tax ID
*
[Ref.: #20218]
Erwinia carotovora 16S ribosomal RNA
M59149
1489
554 tax ID
*
[Ref.: #20218]
Pectobacterium carotovorum subsp. carotovorum strain ATCC 15713 16S ribosomal RNA gene, partial sequence
U80197
1457
555 tax ID
*
[Ref.: #20218]
Pectobacterium carotovorum subsp. carotovorum strain CFBP2046 note sequence type I 16S ribosomal RNA gene, complete sequence
JF926731
1530
555 tax ID
*
[Ref.: #20218]
Pectobacterium carotovorum subsp. carotovorum strain CFBP2046 note sequence type II 16S ribosomal RNA gene, complete sequence
JF926732
1530
555 tax ID
*
[Ref.: #20218]
Erwinia carotovora 16S rRNA gene (strain DSM 30168)
AJ233411
1497
554 tax ID
*
[Ref.: #20218]
Pectobacterium carotovorum subsp. carotovorum strain ICMP 5702 16S ribosomal RNA gene, partial sequence
EF530557
1344
555 tax ID
*
[Ref.: #20218]
Erwinia carotovora strain LMG2404 16S-23S ribosomal RNA intergenic spacer, complete sequence
AF209772
558
554 tax ID
*
[Ref.: #20218]
Pectobacterium carotovorum subsp. carotovorum strain IFB5263 16S ribosomal RNA gene, partial sequence
KF704793
1296
555 tax ID
*
[Ref.: #20218]
Erwinia carotovora LMG 2404-T 16S ribosomal RNA
Z96089
1497
554 tax ID
*
Availability in culture collections External links
[Ref.: #9177]
Culture collection no.
DSM 30168 , ATCC 15713 , CCM 1008 , NCPPB 312 , CCUG 4907 , ICMP 5702
[Ref.: #20218]
Associated Passport(s) in StrainInfo
10106 , 10101 , 98574 , 10102 , 10109
Literature:
Only first 10 entries are displayed. Click here to see all. Click here to see only first 10 entries.
Topic
Title
Authors
Journal
DOI
Year
Phylogeny
[Polyamines in representative taxa of coryneform and other bacteria].
Gvozdiak OP, Chernaia NE
Mikrobiol Zh
1990
*
Phylogeny
Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov.
Gardan L, Gouy C, Christen R, Samson R
Int J Syst Evol Microbiol
10.1099/ijs.0.02423-0
2003
*
Pathogenicity
Antimicrobial activity of some macrophytes from Lake Manzalah (Egypt).
Fareed MF, Haroon AM, Rabeh SA
Pak J Biol Sci
10.3923/pjbs.2008.2454.2463
2008
*
Genetics
Draft Genome Sequence for ICMP 5702, the Type Strain of Pectobacterium carotovorum subsp. carotovorum That Causes Soft Rot Disease on Potato.
Panda P, Lu A, Armstrong KF, Pitman AR
Genome Announc
10.1128/genomeA.00875-15
2015
*
Pathogenicity
Tomato as a New Host of Erwinia carotovora subsp. carotovora in Argentina.
Alippi AM, Bo ED, Ronco LB, Casanova PE, Aguilar OM
Plant Dis
10.1094/PDIS.1997.81.2.230A
1997
*
Phylogeny
Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants.
Portier P, Pedron J, Taghouti G, Fischer-Le Saux M, Caullireau E, Bertrand C, Laurent A, Chawki K, Oulgazi S, Moumni M, Andrivon D, Dutrieux C, Faure D, Helias V, Barny MA
Int J Syst Evol Microbiol
10.1099/ijsem.0.003611
2019
*
Versatile Antagonistic Activities of Soil-Borne Bacillus spp. and Pseudomonas spp. against Phytophthora infestans and Other Potato Pathogens.
Caulier S, Gillis A, Colau G, Licciardi F, Liepin M, Desoignies N, Modrie P, Legreve A, Mahillon J, Bragard C
Front Microbiol
10.3389/fmicb.2018.00143
2018
*
Occurrence of Potato Soft Rot Caused by Erwinia carotovora (synonym Pectobacterium carotovorum) in Nepal: A First Report.
Lamichhane JR, Balestra GM, Varvaro L
Plant Dis
10.1094/PDIS-94-3-0382C
2010
*
First Report of Pectobacterium carotovorum subsp. carotovorum on Spathiphyllum wallisii in Argentina.
Alippi AM, Lopez AC
Plant Dis
10.1094/PDIS-93-8-0842C
2009
*
Genome Wide Analysis of the Potato Soft Rot Pathogen Pectobacterium carotovorum Strain ICMP 5702 to Predict Novel Insights into Its Genetic Features.
Mallick T, Mishra R, Mohanty S, Joshi RK
Plant Pathol J
10.5423/PPJ.OA.12.2021.0190
2022
*
References
#9177
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 30168
#34625
; Curators of the CIP;
#44807
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 4907
#68368
Automatically annotated from API 20E .
* These data were automatically processed and therefore are not curated
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