Name: Pectobacterium carotovorum BS 1008
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5022

Type strain:

Species: Pectobacterium carotovorum

Strain Designation: BS 1008, 904, type 32011

Culture col. no.: DSM 30168, ATCC 15713, CCM 1008, NCPPB 312, CCUG 4907, ICMP 5702

Strain history: <- ATCC <- NCPPB <- E. Hellmers, 904

NCBI tax ID(s): 554 (species)

Other strains from Pectobacterium carotovorum

P. carotovorum IX B, DSM 30169, DSM 60109
P. carotovorum 39-1/1, DSM 30170, DSM 60337
P. carotovorum C3, DSM 23893
P. carotovorum A6.2, DSM 23891
P. carotovorum C364.2, DSM 23890
P. carotovorum C267, DSM 23897
P. carotovorum C150, DSM 23894
P. carotovorum BPBB 8, Ecbr 8, DSM 14774, ATCC ...
P. carotovorum BPBB 212, Ecbr 212, DSM 14775, ...
P. carotovorum BPBB 213, Ecbr 213, DSM 14776, ...
P. carotovorum BCBB 371, Ecbr 371, DSM 14777, ...
P. carotovorum A45, DSM 23892
P. carotovorum AGES769/14-A2, DSM 102074
P. carotovorum BL19-1-37, DSM 108906

Section

Pectobacterium carotovorum BS 1008 is an aerobe, mesophilic plant pathogen that was isolated from potato.

aerobe
mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Pectobacterium*
	Species	**Pectobacterium carotovorum**
	Full Scientific Name (PNU)	Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980)

	Synonym	"Bacillus* carotovorus"*
	Synonym	Erwinia carotovora

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #9177]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9177]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #9177]

Culture medium growth

[Ref.: #9177]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #9177]

Culture medium composition

expand / minimize

[Ref.: #34625]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34625]

Culture medium growth

[Ref.: #34625]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9177]	growth	26 °C
[Ref.: #34625]	growth	30 °C
[Ref.: #44807]	growth	26 °C

[Ref.: #9177]	Temperature range	mesophilic
[Ref.: #34625]	Temperature range	mesophilic
[Ref.: #44807]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44807]

Oxygen tolerance

aerobe

[Ref.: #9177]	Name of produced compound	asparaginase
[Ref.: #9177]	Name of produced compound	glutaminase

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #68368]	acetoin ChEBI	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68368]	indole ChEBI	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9177]	15097	+	-	-	-	+	-	-	-	-	+	-	+	+	+	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9177]	Sample type/isolated from	potato

[Ref.: #44807]	Sample type/isolated from	Potato
[Ref.: #44807]	Country	Denmark
[Ref.: #44807]	Country ISO 3 Code	DNK
[Ref.: #44807]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9177]	Pathogenicity (plant)	yes
[Ref.: #9177]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pectobacterium carotovorum subsp. carotovorum gene for 16S ribosomal RNA, partial sequence, strain: ATCC15713	AB242908	1110	ENA	555 tax ID	*
[Ref.: #20218]	Pectobacterium carotovorum subsp. carotovorum strain ATCC 15713 16S-23S intergenic spacer region and tRNA-Glu gene, complete sequence	AF232684	451	ENA	555 tax ID	*
[Ref.: #20218]	Pectobacterium carotovorum subsp. carotovorum strain ATCC 15713 16S ribosomal RNA gene, partial sequence	EU490608	1223	ENA	555 tax ID	*
[Ref.: #20218]	Erwinia carotovora 16S ribosomal RNA	M59149	1489	ENA	554 tax ID	*
[Ref.: #20218]	Pectobacterium carotovorum subsp. carotovorum strain ATCC 15713 16S ribosomal RNA gene, partial sequence	U80197	1457	ENA	555 tax ID	*
[Ref.: #20218]	Pectobacterium carotovorum subsp. carotovorum strain CFBP2046 note sequence type I 16S ribosomal RNA gene, complete sequence	JF926731	1530	ENA	555 tax ID	*
[Ref.: #20218]	Pectobacterium carotovorum subsp. carotovorum strain CFBP2046 note sequence type II 16S ribosomal RNA gene, complete sequence	JF926732	1530	ENA	555 tax ID	*
[Ref.: #20218]	Erwinia carotovora 16S rRNA gene (strain DSM 30168)	AJ233411	1497	ENA	554 tax ID	*
[Ref.: #20218]	Pectobacterium carotovorum subsp. carotovorum strain ICMP 5702 16S ribosomal RNA gene, partial sequence	EF530557	1344	ENA	555 tax ID	*
[Ref.: #20218]	Erwinia carotovora strain LMG2404 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF209772	558	ENA	554 tax ID	*
[Ref.: #20218]	Pectobacterium carotovorum subsp. carotovorum strain IFB5263 16S ribosomal RNA gene, partial sequence	KF704793	1296	ENA	555 tax ID	*
[Ref.: #20218]	Erwinia carotovora LMG 2404-T 16S ribosomal RNA	Z96089	1497	ENA	554 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pectobacterium carotovorum DSM 30168	GCA_900129615	scaffold	GenBank	554 tax ID	*
[Ref.: #66792]	Pectobacterium carotovorum subsp. carotovorum NCPPB 312	GCA_000749855	contig	GenBank	555 tax ID	*
[Ref.: #66792]	Pectobacterium carotovorum subsp. carotovorum ICMP 5702 ICMP 5702	GCA_001039055	contig	GenBank	1267545 tax ID	*
[Ref.: #66792]	Pectobacterium carotovorum strain DSM 30168	554.14	wgs	PATRIC	554 tax ID	*
[Ref.: #66792]	Pectobacterium carotovorum subsp. carotovorum ICMP 5702	1267545.3	wgs	PATRIC	1267545 tax ID	*
[Ref.: #66792]	Pectobacterium carotovorum carotovorum NCPPB 312	2740892407	draft	JGI IMG/M	555 tax ID	*

Availability in culture collections External links

[Ref.: #9177]

Culture collection no.

DSM 30168, ATCC 15713, CCM 1008, NCPPB 312, CCUG 4907, ICMP 5702

[Ref.: #20218]

Associated Passport(s) in StrainInfo

10106, 10101, 98574, 10102, 10109

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[Polyamines in representative taxa of coryneform and other bacteria].	Gvozdiak OP, Chernaia NE	Mikrobiol Zh		1990	*
Phylogeny	Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov.	Gardan L, Gouy C, Christen R, Samson R	Int J Syst Evol Microbiol	10.1099/ijs.0.02423-0	2003	*
Pathogenicity	Antimicrobial activity of some macrophytes from Lake Manzalah (Egypt).	Fareed MF, Haroon AM, Rabeh SA	Pak J Biol Sci	10.3923/pjbs.2008.2454.2463	2008	*
Genetics	Draft Genome Sequence for ICMP 5702, the Type Strain of Pectobacterium carotovorum subsp. carotovorum That Causes Soft Rot Disease on Potato.	Panda P, Lu A, Armstrong KF, Pitman AR	Genome Announc	10.1128/genomeA.00875-15	2015	*
Pathogenicity	Tomato as a New Host of Erwinia carotovora subsp. carotovora in Argentina.	Alippi AM, Bo ED, Ronco LB, Casanova PE, Aguilar OM	Plant Dis	10.1094/PDIS.1997.81.2.230A	1997	*
Phylogeny	Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants.	Portier P, Pedron J, Taghouti G, Fischer-Le Saux M, Caullireau E, Bertrand C, Laurent A, Chawki K, Oulgazi S, Moumni M, Andrivon D, Dutrieux C, Faure D, Helias V, Barny MA	Int J Syst Evol Microbiol	10.1099/ijsem.0.003611	2019	*
	Versatile Antagonistic Activities of Soil-Borne Bacillus spp. and Pseudomonas spp. against Phytophthora infestans and Other Potato Pathogens.	Caulier S, Gillis A, Colau G, Licciardi F, Liepin M, Desoignies N, Modrie P, Legreve A, Mahillon J, Bragard C	Front Microbiol	10.3389/fmicb.2018.00143	2018	*
	Occurrence of Potato Soft Rot Caused by Erwinia carotovora (synonym Pectobacterium carotovorum) in Nepal: A First Report.	Lamichhane JR, Balestra GM, Varvaro L	Plant Dis	10.1094/PDIS-94-3-0382C	2010	*
	First Report of Pectobacterium carotovorum subsp. carotovorum on Spathiphyllum wallisii in Argentina.	Alippi AM, Lopez AC	Plant Dis	10.1094/PDIS-93-8-0842C	2009	*
	Genome Wide Analysis of the Potato Soft Rot Pathogen Pectobacterium carotovorum Strain ICMP 5702 to Predict Novel Insights into Its Genetic Features.	Mallick T, Mishra R, Mohanty S, Joshi RK	Plant Pathol J	10.5423/PPJ.OA.12.2021.0190	2022	*

References

#9177

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30168

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34625 ; Curators of the CIP;
#44807 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4907

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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