Strain identifier
BacDive ID: 5023
Type strain: 
Species: Pectobacterium carotovorum
Strain Designation: IX B
Strain history: <- DSM 60109 <- L.E. Webb <- G. Crüger, IX B
NCBI tax ID(s): 554 (species)
version 9.1 (current version)
General
@ref: 9178
BacDive-ID: 5023
DSM-Number: 30169
keywords: genome sequence, Bacteria, Gram-negative, plant pathogen
description: Pectobacterium carotovorum IX B is a Gram-negative plant pathogen that was isolated from Brassica oleracea var. capitata, soft rot.
NCBI tax id
- NCBI tax id: 554
- Matching level: species
strain history
- @ref: 9178
- history: <- DSM 60109 <- L.E. Webb <- G. Crüger, IX B
doi: 10.13145/bacdive5023.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Pectobacteriaceae
- genus: Pectobacterium
- species: Pectobacterium carotovorum
- full scientific name: Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus carotovorus 20215 Erwinia carotovora
@ref: 9178
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Pectobacteriaceae
genus: Pectobacterium
species: Pectobacterium carotovorum
full scientific name: Pectobacterium carotovorum (Jones 1901) Waldee 1945 emend. Gardan et al. 2003
strain designation: IX B
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99
Culture and growth conditions
culture medium
- @ref: 9178
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 9178
- growth: positive
- type: growth
- temperature: 26
Isolation, sampling and environmental information
isolation
- @ref: 9178
- sample type: Brassica oleracea var. capitata, soft rot
- host species: Brassica oleracea var. capitata
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Decomposing plant |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 9178
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pectobacterium versatile DSM 30169 | GCA_018219365 | chromosome | ncbi | 2488639 |
| 66792 | Pectobacterium versatile strain DSM 30169 | 2488639.45 | complete | patric | 2488639 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.919 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.686 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 74.83 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.083 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 82.411 | no |
External links
@ref: 9178
culture collection no.: DSM 30169, DSM 60109
straininfo link
- @ref: 74518
- straininfo: 49701
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9178 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30169) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30169 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 74518 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49701.1 | StrainInfo: A central database for resolving microbial strain identifiers |