Name: Marinobacter adhaerens HP15
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 493

Type strain:

Species: Marinobacter adhaerens

Strain Designation: HP15

Culture col. no.: DSM 23420, CIP 110141, NCBI AY241552

Strain history: CIP <- 2010, H.P. Grossart, IGB, Stechlin, Germany <- E Kappel, Jacobs Univ., Bremen, Germany: strain HP15

NCBI tax ID(s): 1033846 (species)

SI-ID 379044

CIP 110141, DSM 23420

Special Collections

Section

When using BacDive for research please cite our paper

Marinobacter adhaerens HP15 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine aggregates from surface waters.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter adhaerens**
	Full Scientific Name (LPSN)	Marinobacter adhaerens Kaeppel et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #23126]	Gram stain	negative
[Ref.: #116040]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.994
[Ref.: #125439]	Gram stain	negative Confidence in %99.1

[Ref.: #23126]	Cell length	1.7-2.4 µm

[Ref.: #23126]	Cell width	0.6-0.8 µm

[Ref.: #23126]	Cell shape	rod-shaped
[Ref.: #116040]	Cell shape	rod-shaped

[Ref.: #23126]	Motility	yes
[Ref.: #116040]	Motility	yes
[Ref.: #125438]	Motility	yes Confidence in %90.478

[Ref.: #23126]	Flagellum arrangement	polar

[Ref.: #23126]	Colony size	1.0-2.0 mm
[Ref.: #23126]	Colony color	brown
[Ref.: #23126]	Colony shape	circular
[Ref.: #23126]	Incubation period	2 days
[Ref.: #23126]	Cultivation medium used	MB agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17197]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17197]

Culture medium growth

[Ref.: #17197]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17197]

Culture medium composition

expand / minimize

[Ref.: #23126]

Culture medium

MB agar

[Ref.: #23126]

Culture medium growth

[Ref.: #23126]

Culture medium composition

expand / minimize

[Ref.: #39759]

Culture medium

Marine agar (MA)

[Ref.: #39759]

Culture medium growth

[Ref.: #39759]

Culture medium composition

expand / minimize

[Ref.: #116040]

Culture medium

CIP Medium 13

[Ref.: #116040]

Culture medium growth

[Ref.: #116040]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17197]	growth	37 °C
[Ref.: #23126]	maximum	45 °C
[Ref.: #23126]	minimum	4 °C
[Ref.: #23126]	optimum	34-38 °C
[Ref.: #39759]	growth	30 °C

		pH
[Ref.: #23126]	maximum	<10.5
[Ref.: #23126]	minimum	>5.5
[Ref.: #23126]	optimum	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23126]

Oxygen tolerance

aerobe

[Ref.: #23126]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %98.2

	Salt	Tested relation		Salt conc.
[Ref.: #23126]	NaCl	no	growth	0	%(w/v)
[Ref.: #23126]	NaCl	no	growth	25	%(w/v)
[Ref.: #23126]	NaCl		optimum	2-6	%(w/v)
[Ref.: #23126]	NaCl		minimum	>0.5	%(w/v)
[Ref.: #23126]	NaCl		maximum	<20	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23126]	(-)-quinic acid ChEBI	-	carbon source
[Ref.: #23126]	2,3-butanediol ChEBI	-	carbon source
[Ref.: #23126]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #23126]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #23126]	4-hydroxy-L-proline ChEBI	-	carbon source
[Ref.: #23126]	4-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #23126]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #23126]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #23126]	adipate ChEBI	-	carbon source
[Ref.: #23126]	alpha-cyclodextrin ChEBI	-	carbon source
[Ref.: #23126]	alpha-lactose ChEBI	-	carbon source
[Ref.: #23126]	beta-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #23126]	bromosuccinate ChEBI	+	carbon source
[Ref.: #23126]	cellobiose ChEBI	-	carbon source
[Ref.: #23126]	cis-aconitate ChEBI	+	carbon source
[Ref.: #23126]	citrate ChEBI	-	carbon source
[Ref.: #23126]	D-alanine ChEBI	+	carbon source
[Ref.: #23126]	D-arabitol ChEBI	-	carbon source
[Ref.: #23126]	D-fructose ChEBI	-	carbon source
[Ref.: #23126]	D-galactonic acid lactone ChEBI	-	carbon source
[Ref.: #23126]	D-galactose ChEBI	-	carbon source
[Ref.: #23126]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #23126]	D-glucarate ChEBI	-	carbon source
[Ref.: #23126]	D-glucose ChEBI	-	carbon source
[Ref.: #23126]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #23126]	D-mannitol ChEBI	-	carbon source
[Ref.: #23126]	D-mannose ChEBI	-	carbon source
[Ref.: #23126]	D-serine ChEBI	-	carbon source
[Ref.: #23126]	D-sorbitol ChEBI	-	carbon source
[Ref.: #23126]	decanoate ChEBI	-	carbon source
[Ref.: #23126]	dextrin ChEBI	+	carbon source
[Ref.: #23126]	DL-carnitine ChEBI	-	carbon source
[Ref.: #23126]	erythritol ChEBI	-	carbon source
[Ref.: #23126]	ethanolamine ChEBI	-	carbon source
[Ref.: #23126]	formate ChEBI	-	carbon source
[Ref.: #23126]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #23126]	gentiobiose ChEBI	-	carbon source
[Ref.: #23126]	glucose 1-phosphate ChEBI	-	carbon source
[Ref.: #23126]	glucuronamide ChEBI	-	carbon source
[Ref.: #23126]	glycerol ChEBI	-	carbon source
[Ref.: #23126]	glycerol 3-phosphate ChEBI	-	carbon source
[Ref.: #23126]	glycyl L-aspartic acid ChEBI	-	carbon source
[Ref.: #23126]	glycyl-l-glutamate ChEBI	-	carbon source
[Ref.: #23126]	inosine ChEBI	-	carbon source
[Ref.: #23126]	itaconate ChEBI	-	carbon source
[Ref.: #23126]	L-alaninamide ChEBI	+	carbon source
[Ref.: #23126]	L-alanine ChEBI	+	carbon source
[Ref.: #23126]	L-alanylglycine ChEBI	-	carbon source
[Ref.: #23126]	L-arabinose ChEBI	-	carbon source
[Ref.: #23126]	L-aspartate ChEBI	-	carbon source
[Ref.: #23126]	L-fucose ChEBI	-	carbon source
[Ref.: #23126]	L-glutamate ChEBI	+	carbon source
[Ref.: #23126]	L-histidine ChEBI	-	carbon source
[Ref.: #23126]	L-leucine ChEBI	+	carbon source
[Ref.: #23126]	L-ornithine ChEBI	-	carbon source
[Ref.: #23126]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #23126]	L-proline ChEBI	+	carbon source
[Ref.: #23126]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #23126]	L-rhamnose ChEBI	-	carbon source
[Ref.: #23126]	L-serine ChEBI	-	carbon source
[Ref.: #23126]	L-threonine ChEBI	-	carbon source
[Ref.: #23126]	lactate ChEBI	+	carbon source
[Ref.: #23126]	lactulose ChEBI	-	carbon source
[Ref.: #23126]	malate ChEBI	+	carbon source
[Ref.: #23126]	malonate ChEBI	-	carbon source
[Ref.: #23126]	maltose ChEBI	-	carbon source
[Ref.: #23126]	melibiose ChEBI	-	carbon source
[Ref.: #23126]	methyl D-glucoside ChEBI	-	carbon source
[Ref.: #23126]	monomethyl succinate ChEBI	+	carbon source
[Ref.: #23126]	myo-inositol ChEBI	-	carbon source
[Ref.: #23126]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #23126]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #23126]	nitrate ChEBI	-	reduction
[Ref.: #116040]	nitrate ChEBI	-	reduction
[Ref.: #116040]	nitrite ChEBI	-	reduction
[Ref.: #23126]	phenylacetate ChEBI	+	carbon source
[Ref.: #23126]	phenylethylamine ChEBI	-	carbon source
[Ref.: #23126]	propionate ChEBI	-	carbon source
[Ref.: #23126]	psicose ChEBI	-	carbon source
[Ref.: #23126]	putrescine ChEBI	-	carbon source
[Ref.: #23126]	pyruvate ChEBI	+	carbon source
[Ref.: #23126]	raffinose ChEBI	-	carbon source
[Ref.: #23126]	ribitol ChEBI	-	carbon source
[Ref.: #23126]	sebacic acid ChEBI	-	carbon source
[Ref.: #23126]	sucrose ChEBI	-	carbon source
[Ref.: #23126]	thymidine ChEBI	-	carbon source
[Ref.: #23126]	trehalose ChEBI	-	carbon source
[Ref.: #23126]	tryptophan ChEBI	-	energy source
[Ref.: #23126]	turanose ChEBI	-	carbon source
[Ref.: #23126]	tween 40 ChEBI	+	carbon source
[Ref.: #23126]	tween 80 ChEBI	+	carbon source
[Ref.: #23126]	uridine ChEBI	-	carbon source
[Ref.: #23126]	urocanic acid ChEBI	-	carbon source
[Ref.: #23126]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23126]		indole ChEBI	no
[Ref.: #116040]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #23126]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #23126]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #23126]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #23126]	beta-glucosidase	-	3.2.1.21
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116040]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #23126]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116040]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #23126]	tryptophan deaminase	-	4.1.99.1
[Ref.: #23126]	urease	-	3.5.1.5
[Ref.: #116040]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116040]	12391	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17197]	Sample type/isolated from	marine aggregates (0.1-1 mm in diameter) from surface waters
[Ref.: #17197]	Geographic location (country and/or sea, region)	German Wadden Sea, North Sea
[Ref.: #17197]	Country	Germany
[Ref.: #17197]	Country ISO 3 Code	DEU
[Ref.: #17197]	Continent	Europe

[Ref.: #116040]	Sample type/isolated from	Environment, Marine aggregates, surface waters
[Ref.: #116040]	Geographic location (country and/or sea, region)	Wadden Sea
[Ref.: #116040]	Country	Germany
[Ref.: #116040]	Country ISO 3 Code	DEU
[Ref.: #116040]	Continent	Europe
[Ref.: #116040]	Isolation date	2001
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY241552 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	3127
Soil Samples	149
Animal Samples	133
Plant Samples	29
Total Samples	3438

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17197]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116040]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17197]	Marinobacter adhaerens HP15 16S ribosomal RNA gene, partial sequence	AY241552	1531	GenBank ENA	225937 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter adhaerens HP15	GCA_000166295	complete	GenBank ENA	225937 tax ID	*
[Ref.: #66792]	Marinobacter adhaerens HP15	225937.20	plasmid	PATRIC	225937 tax ID	*
[Ref.: #66792]	Marinobacter adhaerens HP15	225937.19	plasmid	PATRIC	225937 tax ID	*
[Ref.: #66792]	Marinobacter adhaerens HP15	225937.3	complete	PATRIC	225937 tax ID	*
[Ref.: #66792]	Marinobacter adhaerens HP15	650377991	complete	JGI IMG/M	225937 tax ID	*

[Ref.: #17197]	GC-content	56.9 mol%	sequence analysis
[Ref.: #23126]	GC-content	56.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter adhaerens HP15 HP15 NCBI: GCA_000166295.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.994	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.723	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	85.169	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.336	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	90.478	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacter adhaerens HP15 PATRIC: 225937.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	76.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.1
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	72.9

Availability in culture collections External links

[Ref.: #17197]

Culture collection no.

DSM 23420, CIP 110141, NCBI AY241552

[Ref.: #70172]

SI-ID 379044

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter arenosus sp. nov., a halotolerant bacterium isolated from a tidal flat.	Lee Y, Weerawongwiwat V, Kim JH, Suh MK, Kim HS, Lee JS, Yoon JH, Sukhoom A, Kim W	Arch Microbiol	10.1007/s00203-021-02696-7	2022	*
Phylogeny	Marinobacter adhaerens sp. nov., isolated from marine aggregates formed with the diatom Thalassiosira weissflogii.	Kaeppel EC, Gardes A, Seebah S, Grossart HP, Ullrich MS	Int J Syst Evol Microbiol	10.1099/ijs.0.030189-0	2011	*

References

#17197

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23420

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23126

Eva C. Kaeppel, Astrid Gärdes, Shalin Seebah, Hans-Peter Grossart, Matthias S. Ullrich: Marinobacter adhaerens sp. nov., isolated from marine aggregates formed with the diatom Thalassiosira weissflogii. IJSEM 62: 124 - 128 2012 ( DOI 10.1099/ijs.0.030189-0 , PubMed 21335492 )

#39759 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70172

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379044.1 )

#116040 Collection of Institut Pasteur ; Curators of the CIP; CIP 110141

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Marinobacter adhaerens HP15 HP15

Marinobacter adhaerens HP15

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