Marinobacter adhaerens (DSM 23420, CIP 110141, HP15)

Name: Marinobacter adhaerens (DSM 23420, CIP 110141, HP15)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 493

Type strain

Strain Designation HP15

Culture col. no. DSM 23420 CIP 110141 HP15 NCBI AY241552

NCBI tax ID(s) 1033846

Special Collections DSMZ CIP Literature strains North Sea Microbiome

History <- Eva Kaeppel, Jacobs University Bremen, Germany; HP15 <- H. P. Grossart, ICMB, Univ. Oldenburg, Germany CIP <- 2010, H.P. Grossart, IGB, Stechlin, Germany <- E Kappel, Jacobs Univ., Bremen, Germany: strain HP15

Links

Marinobacter adhaerens HP15 is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from marine aggregates from surface waters.

Gram-negative motile rod-shaped colony-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 379044

LMG 29242,CIP 110141,DSM 23420

@ref 20215

Last LPSN update 2026-02-09 11:17:53

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter adhaerens

Full scientific name Marinobacter adhaerens Kaeppel et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
23126	negative	1.7-2.4 µm	0.6-0.8 µm	rod-shaped	polar
116040	negative			rod-shaped
125438						90.478
125438	negative					97.994
125439	negative					99.1

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
23126	1.0-2.0 mm	brown	circular	2 days	MB agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17197	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23126	MB agar		5 g peptone, 1 g yeast extract, 0.1 g FePO 4, 6 g agar in 750 ml North Sea water and 250 ml distilled water
39759	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
116040	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17197	positive	growth	37	mesophilic
23126	positive	maximum	45	thermophilic
23126	positive	minimum	4	psychrophilic
23126	positive	optimum	34-38	mesophilic
39759	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
23126	positive	maximum	<10.5	alkaliphile
23126	positive	minimum	>5.5
23126	positive	optimum	7.0-9.0

Physiology and metabolism

Oxygen tolerance

23126

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
23126
125439		98.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23126	NaCl		growth	0 %(w/v)
23126	NaCl		growth	25 %(w/v)
23126	NaCl	positive	optimum	2-6 %(w/v)
23126	NaCl	positive	minimum	>0.5 %(w/v)
23126	NaCl	positive	maximum	<20 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23126	17521 ChEBI	(-)-quinic acid	-	carbon source
23126	62064 ChEBI	2,3-butanediol	-	carbon source
23126	64552 ChEBI	2-hydroxybutyrate	-	carbon source
23126	28644 ChEBI	2-oxopentanoate	+	carbon source
23126	18240 ChEBI	4-hydroxy-L-proline	-	carbon source
23126	16724 ChEBI	4-hydroxybutyrate	+	carbon source
23126	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
23126	17426 ChEBI	5-dehydro-D-gluconate	+	carbon source
23126	17128 ChEBI	adipate	-	carbon source
23126	40585 ChEBI	alpha-cyclodextrin	-	carbon source
23126	36219 ChEBI	alpha-lactose	-	carbon source
23126	8295 ChEBI	beta-hydroxybutyrate	+	carbon source
23126	73706 ChEBI	bromosuccinate	+	carbon source
23126	17057 ChEBI	cellobiose	-	carbon source
23126	16383 ChEBI	cis-aconitate	+	carbon source
23126	16947 ChEBI	citrate	-	carbon source
23126	15570 ChEBI	D-alanine	+	carbon source
23126	18333 ChEBI	D-arabitol	-	carbon source
23126	15824 ChEBI	D-fructose	-	carbon source
23126	15895 ChEBI	D-galactonic acid lactone	-	carbon source
23126	12936 ChEBI	D-galactose	-	carbon source
23126	18024 ChEBI	D-galacturonic acid	-	carbon source
23126	30612 ChEBI	D-glucarate	-	carbon source
23126	17634 ChEBI	D-glucose	-	carbon source
23126	14314 ChEBI	D-glucose 6-phosphate	-	carbon source
23126	16899 ChEBI	D-mannitol	-	carbon source
23126	16024 ChEBI	D-mannose	-	carbon source
23126	16523 ChEBI	D-serine	-	carbon source
23126	17924 ChEBI	D-sorbitol	-	carbon source
23126	27689 ChEBI	decanoate	-	carbon source
23126	23652 ChEBI	dextrin	+	carbon source
23126	17126 ChEBI	DL-carnitine	-	carbon source
23126	17113 ChEBI	erythritol	-	carbon source
23126	16000 ChEBI	ethanolamine	-	carbon source
23126	15740 ChEBI	formate	-	carbon source
23126	16865 ChEBI	gamma-aminobutyric acid	-	carbon source
23126	28066 ChEBI	gentiobiose	-	carbon source
23126	29042 ChEBI	glucose 1-phosphate	-	carbon source
23126	32323 ChEBI	glucuronamide	-	carbon source
23126	17754 ChEBI	glycerol	-	carbon source
23126	15978 ChEBI	glycerol 3-phosphate	-	carbon source
23126	73804 ChEBI	glycyl L-aspartic acid	-	carbon source
23126	73784 ChEBI	glycyl-l-glutamate	-	carbon source
23126	17596 ChEBI	inosine	-	carbon source
23126	17240 ChEBI	itaconate	-	carbon source
23126	21217 ChEBI	L-alaninamide	+	carbon source
23126	16977 ChEBI	L-alanine	+	carbon source
23126	73786 ChEBI	L-alanylglycine	-	carbon source
23126	30849 ChEBI	L-arabinose	-	carbon source
23126	29991 ChEBI	L-aspartate	-	carbon source
23126	18287 ChEBI	L-fucose	-	carbon source
23126	29985 ChEBI	L-glutamate	+	carbon source
23126	15971 ChEBI	L-histidine	-	carbon source
23126	15603 ChEBI	L-leucine	+	carbon source
23126	15729 ChEBI	L-ornithine	-	carbon source
23126	17295 ChEBI	L-phenylalanine	-	carbon source
23126	17203 ChEBI	L-proline	+	carbon source
23126	18183 ChEBI	L-pyroglutamic acid	-	carbon source
23126	62345 ChEBI	L-rhamnose	-	carbon source
23126	17115 ChEBI	L-serine	-	carbon source
23126	16857 ChEBI	L-threonine	-	carbon source
23126	24996 ChEBI	lactate	+	carbon source
23126	6359 ChEBI	lactulose	-	carbon source
23126	25115 ChEBI	malate	+	carbon source
23126	15792 ChEBI	malonate	-	carbon source
23126	17306 ChEBI	maltose	-	carbon source
23126	28053 ChEBI	melibiose	-	carbon source
23126	37657 ChEBI	methyl D-glucoside	-	carbon source
23126	75146 ChEBI	monomethyl succinate	+	carbon source
23126	17268 ChEBI	myo-inositol	-	carbon source
23126	28037 ChEBI	N-acetylgalactosamine	-	carbon source
23126	506227 ChEBI	N-acetylglucosamine	-	carbon source
23126	17632 ChEBI	nitrate	-	reduction
116040	17632 ChEBI	nitrate	-	reduction
116040	16301 ChEBI	nitrite	-	reduction
23126	18401 ChEBI	phenylacetate	+	carbon source
23126	50048 ChEBI	phenylethylamine	-	carbon source
23126	17272 ChEBI	propionate	-	carbon source
23126	33951 ChEBI	psicose	-	carbon source
23126	17148 ChEBI	putrescine	-	carbon source
23126	15361 ChEBI	pyruvate	+	carbon source
23126	16634 ChEBI	raffinose	-	carbon source
23126	15963 ChEBI	ribitol	-	carbon source
23126	41865 ChEBI	sebacic acid	-	carbon source
23126	17992 ChEBI	sucrose	-	carbon source
23126	17748 ChEBI	thymidine	-	carbon source
23126	27082 ChEBI	trehalose	-	carbon source
23126	27897 ChEBI	tryptophan	-	energy source
23126	32528 ChEBI	turanose	-	carbon source
23126	53423 ChEBI	tween 40	+	carbon source
23126	53426 ChEBI	tween 80	+	carbon source
23126	16704 ChEBI	uridine	-	carbon source
23126	27248 ChEBI	urocanic acid	-	carbon source
23126	17151 ChEBI	xylitol	-	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23126	35581 ChEBI	indole
116040	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
23126	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
23126	6-phospho-beta-galactosidase	-	3.2.1.85
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
23126	arginine dihydrolase	-	3.5.3.6
68382	beta-galactosidase	-	3.2.1.23	from API zym
23126	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116040	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
23126	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116040	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
23126	tryptophan deaminase	-	4.1.99.1
23126	urease	-	3.5.1.5
116040	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116040	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
17197	marine aggregates (0.1-1 mm in diameter) from surface waters	German Wadden Sea, North Sea	Germany	DEU	Europe
116040	Environment, Marine aggregates, surface waters	Wadden Sea	Germany	DEU	Europe	2001

Taxonmaps

69479

Global distribution of 16S sequence AY241552 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	3127
Soil Samples	149
Animal Samples	133
Plant Samples	29
Total Samples	3438

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17197	1	Risk group (German classification) According to TRBA 466
116040	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM16629v1 assembly for Marinobacter adhaerens HP15	complete	GCA_000166295	225937.3	650377991	225937	98.7

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17197	Marinobacter adhaerens HP15 16S ribosomal RNA gene, partial sequence	AY241552	1531		225937

GC content

@ref	GC-content (mol%)	Method
17197	56.9	sequence analysis
23126	56.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacter adhaerens HP15
PATRIC: 225937.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	yes	76.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	72.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacter adhaerens HP15 HP15
NCBI: GCA_000166295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.99	yes
125438	anaerobic	anaerobicⓘ	no	94.72	no
125438	aerobic	aerobicⓘ	yes	85.17	yes
125438	spore-forming	spore-formingⓘ	no	89.34	yes
125438	thermophilic	thermophileⓘ	no	99.00	no
125438	flagellated	motile2+ⓘ	yes	90.48	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism.	Gardes A, Kaeppel E, Shehzad A, Shehzad A, Seebah S, Teeling H, Yarza P, Glockner FO, Grossart HP, Ullrich MS.	Stand Genomic Sci	10.4056/sigs.922139	2010
	Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.	Price MN, Zane GM, Kuehl JV, Melnyk RA, Wall JD, Deutschbauer AM, Arkin AP.	PLoS Genet	10.1371/journal.pgen.1007147	2018
	Chemotaxis of Marinobacter adhaerens and its impact on attachment to the diatom Thalassiosira weissflogii.	Sonnenschein EC, Syit DA, Grossart HP, Ullrich MS.	Appl Environ Microbiol	10.1128/aem.01790-12	2012
Phylogeny	Marinobacter arenosus sp. nov., a halotolerant bacterium isolated from a tidal flat.	Lee Y, Weerawongwiwat V, Kim JH, Suh MK, Kim HS, Lee JS, Yoon JH, Sukhoom A, Kim W	Arch Microbiol	10.1007/s00203-021-02696-7	2022
Phylogeny	Marinobacter adhaerens sp. nov., isolated from marine aggregates formed with the diatom Thalassiosira weissflogii.	Kaeppel EC, Gardes A, Seebah S, Grossart HP, Ullrich MS	Int J Syst Evol Microbiol	10.1099/ijs.0.030189-0	2011

References

#17197	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23420
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23126	Eva C. Kaeppel, Astrid Gärdes, Shalin Seebah, Hans-Peter Grossart, Matthias S. Ullrich: Marinobacter adhaerens sp. nov., isolated from marine aggregates formed with the diatom Thalassiosira weissflogii. IJSEM 62: 124 - 128 2012 ( DOI 10.1099/ijs.0.030189-0 , PubMed 21335492 )
#39759	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116040	Collection of Institut Pasteur ; Curators of the CIP; CIP 110141
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Marinobacter adhaerens (DSM 23420, CIP 110141, HP15)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000166295

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media