Name: Marinobacter zhanjiangensis DSM 21077
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 494

Type strain:

Species: Marinobacter zhanjiangensis

Culture col. no.: DSM 21077, CCTCC AB 208029, KCTC 22280, JSM 078120

Strain history: <- YG Chen, Yunnan Inst., China

NCBI tax ID(s): 578215 (species)

SI-ID 406420

DSM 21077

Section

Marinobacter zhanjiangensis DSM 21077 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater from tidal flat.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter zhanjiangensis**
	Full Scientific Name (LPSN)	Marinobacter zhanjiangensis Zhuang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %97.466

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15544]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15544]

Culture medium growth

[Ref.: #15544]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15544]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15544]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #15544]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15544]	Sample type/isolated from	seawater from tidal flat
[Ref.: #15544]	Geographic location (country and/or sea, region)	South China Sea, Naozhou Island
[Ref.: #15544]	Country	China
[Ref.: #15544]	Country ISO 3 Code	CHN
[Ref.: #15544]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sea water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Guangdong province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ425903 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	23
Soil Samples
Animal Samples	3
Plant Samples
Total Samples	26

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15544]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15544]	Marinobacter zhanjiangensis strain JSM 078120 16S ribosomal RNA gene, partial sequence	FJ425903	1492	ENA	578215 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter zhanjiangensis KCTC 22280	GCA_014651935	scaffold	GenBank	578215 tax ID	*
[Ref.: #66792]	Marinobacter zhanjiangensis strain KCTC 22280	578215.3	wgs	PATRIC	578215 tax ID	*

[Ref.: #15544]

GC-content

60.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinobacter zhanjiangensis KCTC 22280 NCBI: GCA_014651935.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinobacter zhanjiangensis KCTC 22280 NCBI: GCA_014651935.1
[Ref.: #69480]	motile	yes	90.085	no
[Ref.: #69480]	flagellated	yes	83.333	no
[Ref.: #69480]	gram-positive	no	98.232	no
[Ref.: #69480]	anaerobic	no	98.189	yes
[Ref.: #69480]	aerobic	yes	85.844	yes
[Ref.: #69480]	halophile	yes	91.211	no
[Ref.: #69480]	spore-forming	no	95.547	no
[Ref.: #69480]	glucose-util	yes	67.685	no
[Ref.: #69480]	thermophile	no	99.024	yes
[Ref.: #69480]	glucose-ferment	no	86.125	no

Availability in culture collections External links

[Ref.: #15544]

Culture collection no.

DSM 21077, CCTCC AB 208029, KCTC 22280, JSM 078120

[Ref.: #70173]

SI-ID 406420

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter zhanjiangensis sp. nov., a marine bacterium isolated from sea water of a tidal flat of the South China Sea.	Zhuang DC, Chen YG, Zhang YQ, Tang SK, Wu XL, Tan ZC, Li WJ, Cui XL	Antonie Van Leeuwenhoek	10.1007/s10482-009-9344-5	2009	*

References

#15544

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21077

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70173

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406420.1 )

* These data were automatically processed and therefore are not curated

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Marinobacter zhanjiangensis KCTC 22280

Marinobacter zhanjiangensis KCTC 22280

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