Strain identifier
BacDive ID: 494
Type strain: 
Species: Marinobacter zhanjiangensis
Strain history: <- YG Chen, Yunnan Inst., China
NCBI tax ID(s): 578215 (species)
version 8.1 (current version)
General
@ref: 15544
BacDive-ID: 494
DSM-Number: 21077
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Marinobacter zhanjiangensis DSM 21077 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater from tidal flat.
NCBI tax id
- NCBI tax id: 578215
- Matching level: species
strain history
| @ref | history |
|---|---|
| 15544 | <- S.-K. Tang and Y.-G. Chen, YIM; JSM 078120 <- Y.-G. Chen and H.-D. Xiao |
| 67771 | <- YG Chen, Yunnan Inst., China |
doi: 10.13145/bacdive494.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter zhanjiangensis
- full scientific name: Marinobacter zhanjiangensis Zhuang et al. 2012
@ref: 15544
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter zhanjiangensis
full scientific name: Marinobacter zhanjiangensis Zhuang et al. 2012
type strain: yes
Morphology
cell morphology
| @ref | gram stain | motility | confidence |
|---|---|---|---|
| 67771 | negative | ||
| 69480 | yes | 97.466 | |
| 69480 | negative | 99.997 |
Culture and growth conditions
culture medium
- @ref: 15544
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Pancreatic digest of casein 1.0 g/l Yeast extract 1.0 g/l Malt extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15544 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 15544 | seawater from tidal flat | South China Sea, Naozhou Island | China | CHN | Asia |
| 67771 | From sea water | Guangdong province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Tidal flat |
taxonmaps
- @ref: 69479
- File name: preview.99_23550.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_5482;98_6914;99_23550&stattab=map
- Last taxonomy: Marinobacter
- 16S sequence: FJ425903
- Sequence Identity:
- Total samples: 26
- aquatic counts: 23
- animal counts: 3
Safety information
risk assessment
- @ref: 15544
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15544
- description: Marinobacter zhanjiangensis strain JSM 078120 16S ribosomal RNA gene, partial sequence
- accession: FJ425903
- length: 1492
- database: ena
- NCBI tax ID: 578215
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacter zhanjiangensis KCTC 22280 | GCA_014651935 | scaffold | ncbi | 578215 |
| 66792 | Marinobacter zhanjiangensis strain KCTC 22280 | 578215.3 | wgs | patric | 578215 |
GC content
- @ref: 15544
- GC-content: 60.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 90.085 | no |
| flagellated | yes | 83.333 | no |
| gram-positive | no | 98.232 | no |
| anaerobic | no | 98.189 | yes |
| aerobic | yes | 85.844 | yes |
| halophile | yes | 91.211 | no |
| spore-forming | no | 95.547 | no |
| glucose-util | yes | 67.685 | no |
| thermophile | no | 99.024 | yes |
| glucose-ferment | no | 86.125 | no |
External links
@ref: 15544
culture collection no.: DSM 21077, CCTCC AB 208029, KCTC 22280, JSM 078120
straininfo link
- @ref: 70173
- straininfo: 406420
literature
- topic: Phylogeny
- Pubmed-ID: 19390986
- title: Marinobacter zhanjiangensis sp. nov., a marine bacterium isolated from sea water of a tidal flat of the South China Sea.
- authors: Zhuang DC, Chen YG, Zhang YQ, Tang SK, Wu XL, Tan ZC, Li WJ, Cui XL
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-009-9344-5
- year: 2009
- mesh: China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Marinobacter/classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 15544 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21077) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21077 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 70173 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406420.1 | StrainInfo: A central database for resolving microbial strain identifiers |