Escherichia sp. (DSM 24827, 3/2/53, 3_2_53FAA)

Name: Escherichia sp. (DSM 24827, 3/2/53, 3_2_53FAA)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4929

Type strain

Strain Designation 3/2/53, 3_2_53FAA

Culture col. no. DSM 24827 3/2/53 3_2_53FAA BEI HM-38

NCBI tax ID(s) 1884818

Special Collections DSMZ

History <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; 3/2/53

Links

3/2/53 is a mesophilic prokaryote that was isolated from human gut biopsy.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 404354

DSM 24827

@ref 20215

Last LPSN update 2025-12-16 09:47:56

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Escherichia

Full scientific name Escherichia Castellani and Chalmers 1919 (Approved Lists 1980)

Synonyms (1)

Atlantibacter

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.75

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17781	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
17781	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17781	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Biopsy
#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	#Stomach

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
17781	human gut biopsy	Alberta, Calgary	Canada	CAN	North America	51.0486	-114.071 51.0486/-114.071

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Escherichia_sp_3_2_53FAA_V2 assembly for Escherichia coli 3_2_53FAA	scaffold	GCA_000157115	469598.5	646206259	562	57.37

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Escherichia sp. 3_2_53FAA
PATRIC: 469598.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.10	no
125439	motility	BacteriaNetⓘ	no	50.20	no
125439	gram_stain	BacteriaNetⓘ	negative	82.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	85.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Escherichia sp. 3_2_53FAA
PATRIC: 469598.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.75	no
125438	anaerobic	anaerobicⓘ	no	96.05	no
125438	spore-forming	spore-formingⓘ	no	88.20	no
125438	aerobic	aerobicⓘ	no	67.65	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	76.98	no

Literature

References

#17781	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24827
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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