Pseudescherichia vulneris (CCUG 15715, DSM 4564, ATCC 33821)

Name: Pseudescherichia vulneris (CCUG 15715, DSM 4564, ATCC 33821)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4928

Type strain

Strain Designation 875-72, 580

Culture col. no. CCUG 15715 DSM 4564 ATCC 33821 IAM 14239 JCM 1688 11 more

NCBI tax ID(s) 1115515 566

Special Collections DSMZ CCUG JCM CIP

History <- ATCC; ATCC 33821 <- CDC, Atlanta; CDC 875-72 <- NIH; NIH 580 Y. Kosako 82084 <-- R. Sakazaki 501 <-- D. J. Brenner CDC 875-72 <-- NIH 580. CIP <- 1988, ATCC <- CDC: strain 875-72 <- Nat. Inst. Hlth., Bethesda, CA, USA: strain 580

Links

Pseudescherichia vulneris 875-72 is an aerobe, Gram-negative, motile bacterium that was isolated from human wound.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 2808

LMG 7868,ATCC 33821,CCUG 15715,CIP 103177,JCM 1688,NCTC 12130,DSM 4564,IAM 14239,BCRC 15953,CCRC 15953,HAMBI 1694,CNCTC 6254,CGMCC 1.3441,NBRC 102420

@ref 20215

Last LPSN update 2026-02-09 11:18:50

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Pseudescherichia

Species Pseudescherichia vulneris

Full scientific name Pseudescherichia vulneris (Brenner et al. 1983) Alnajar and Gupta 2017

Synonyms (1)

Escherichia vulneris

BacDive ID	Other strains from **Pseudescherichia vulneris** (14)	Type strain
136363	P. vulneris CIP 104943
137284	P. vulneris 1242-84, CIP 104944
143728	P. vulneris CCUG 21149
143729	P. vulneris CCUG 21150
143730	P. vulneris CCUG 21151
143764	P. vulneris CCUG 21199
143765	P. vulneris CCUG 21200
144097	P. vulneris CCUG 23001
144789	P. vulneris CCUG 26554
156427	P. vulneris CCUG 61693
163124	P. vulneris JCM 2129
163125	P. vulneris JCM 2130
163127	P. vulneris JCM 2131
163129	P. vulneris JCM 2132

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
123895	negative	rod-shaped
125438	negative		100
125439	negative		99.3

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
40554	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
1772	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
1772	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
123895	CIP Medium 72	Medium recipe at CIP
123895	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1772	positive	growth	37
40554	positive	growth	30
46328	positive	growth	30-37
67770	positive	growth	37
123895	positive	growth	30-41
123895	negative	growth	5
123895	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
46328	aerobe
123895	facultative anaerobe
125439	aerobe	94.6

Spore formation

@ref	Spore formation	Confidence
125439		96.4

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
123895	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	+	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
123895	15792 ChEBI	malonate	+	assimilation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
123895	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
123895	17632 ChEBI	nitrate	+	reduction
123895	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
123895	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123895	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123895	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123895	15688 ChEBI	acetoin	-
123895	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123895	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
123895	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123895	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
123895	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
123895	lysine decarboxylase	+	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123895	ornithine decarboxylase	-	4.1.1.17
123895	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
123895	tryptophan deaminase	-
123895	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

46328

Fatty acid	Percentage	ECL
C16:0	34.1	16
C18:1 ω7c /12t/9t	18.4	17.824
C16:1 ω7c	17	15.819
C14:0 3OH/C16:1 ISO I	10	15.485
C17:0 CYCLO	7.1	16.888
C11:0 ISO 3OH	7	12.09
C14:0	2.4	14
unknown 14.503	1.3	14.503
unknown 13.961	1	13.961
C19:0 ISO	0.9	18.633
C18:0	0.8	18

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123895	-	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123895	not determinedn.d.	+	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	-	+	-	-	-	+	-	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	-	+	-	-	-	-	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Other	#Wound

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1772	human wound
46328	Human wound	Bethesda	USA	USA	North America
67770	Human wound	Bethesda, MD	USA	USA	North America
123895	Human, Wound

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1772	2	Risk group (German classification) According to TRBA 466
123895	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM75979v1 assembly for Pseudescherichia vulneris NBRC 102420	contig	GCA_000759795	1115515.3	2600255014	1115515	67.09
67770	29859_B01 assembly for Pseudescherichia vulneris NCTC12130	contig	GCA_900450975	566.6	2806310681	566	45.87

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Escherichia vulneris strain ATCC 33821 16S ribosomal RNA gene, partial sequence	AF530476	1468	566
20218	E.vulneris (ATCC 33821T) gene for 16S rRNA	X80734	1443	566
20218	Escherichia vulneris gene for 16S rRNA, partial sequence, strain: NBRC 102420	AB681776	1465	566
124043	Pseudescherichia vulneris strain ATCC 33821 16S ribosomal RNA gene, partial sequence.	MT186163	1435	566
124043	Escherichia vulneris strain ATCC 33821 16S ribosomal RNA gene, partial sequence.	KP941760	882	566

GC content

@ref	GC-content (mol%)	Method
67770	58.5-58.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudescherichia vulneris NBRC 102420
NCBI: GCA_000759795

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	94.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	motility	BacteriaNetⓘ	yes	63.90	no
125439	spore_formation	BacteriaNetⓘ	no	96.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Escherichia vulneris NBRC 102420
PATRIC: 1115515.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.17	yes
125438	spore-forming	spore-formingⓘ	no	89.07	no
125438	aerobic	aerobicⓘ	no	67.86	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	79.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	List of new names and new combinations previously effectively, but not validly, published.	Oren A, Garrity GM.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002415	2017
	Novel Endophytic Pseudescherichia sp. GSE25 Strain Significantly Controls Fusarium graminearum and Reduces Deoxynivalenol in Wheat.	Gao M, Abdallah MF, Song M, Xu Y, Sun D, Lu P, Wang J.	Toxins (Basel)	10.3390/toxins15120702	2023
	Background Adjusted Alignment-Free Dissimilarity Measures Improve the Detection of Horizontal Gene Transfer.	Tang K, Lu YY, Sun F.	Front Microbiol	10.3389/fmicb.2018.00711	2018
Phylogeny	Escherichia vulneris: a new species of Enterobacteriaceae associated with human wounds.	Brenner DJ, McWhorter AC, Knutson JK, Steigerwalt AG	J Clin Microbiol	10.1128/jcm.15.6.1133-1140.1982	1982
Phylogeny	Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana.	Liu S, Jin D, Lan R, Wang Y, Meng Q, Dai H, Lu S, Hu S, Xu J	Int J Syst Evol Microbiol	10.1099/ijs.0.000228	2015

References

#1772	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4564
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40554	; Curators of the CIP;
#46328	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15715
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#123895	Collection of Institut Pasteur ; Curators of the CIP; CIP 103177
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Pseudescherichia vulneris (CCUG 15715, DSM 4564, ATCC 33821)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000759795

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media