Name: Escherichia sp. Cla-CZ-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160359

Type strain:

Species: Escherichia sp.

Strain Designation: Cla-CZ-1

Culture col. no.: DSM 109009

Strain history: <- T. Clavel, RWTH Aachen; Cla-CZ-1 <- C. Zenner, LMU, München;

NCBI tax ID(s): 2779353 (species)

Special Collections

Other strains from Escherichia sp.

Section

When using BacDive for research please cite our paper

Escherichia sp. Cla-CZ-1 is a mesophilic bacterium that was isolated from chicken cecal content, adult.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Escherichia*
	Full Scientific Name (LPSN)	Escherichia Castellani and Chalmers 1919 (Approved Lists 1980)

Synonym

"Atlantibacter"

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %99.75
[Ref.: #125439]	Gram stain	negative Confidence in %90.7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67265]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #67265]

Culture medium growth

[Ref.: #67265]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67265]

Culture medium composition

expand / minimize

[Ref.: #67265]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #67265]

Culture medium growth

[Ref.: #67265]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #67265]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Ability of spore formation

no Confidence in %92.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67265]	Sample type/isolated from	chicken cecal content, adult
[Ref.: #67265]	Geographic location (country and/or sea, region)	Munich
[Ref.: #67265]	Country	Germany
[Ref.: #67265]	Country ISO 3 Code	DEU
[Ref.: #67265]	Continent	Europe
[Ref.: #67265]	Geographic location	48.1502°/11.5856°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67265]	Escherichia sp. strain ClaCZ1 16S ribosomal RNA gene, partial sequence	MN055927.1	1480	GenBank ENA	1884818 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Escherichia sp. DSM 109009	GCA_014982845	contig	GenBank ENA	2779353 tax ID	*
[Ref.: #66792]	Escherichia sp. DSM 109009	2779353.3	wgs	PATRIC	2779353 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Escherichia sp. DSM 109009 PATRIC: 2779353.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.75	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.016	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	87.948	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	59.185	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	76.356	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Escherichia sp. DSM 109009 NCBI: GCA_014982845
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	92.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	67
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	90.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	83.7

Availability in culture collections External links

[Ref.: #67265]

Culture collection no.

DSM 109009

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67265

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109009

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Escherichia sp. DSM 109009

Escherichia sp. DSM 109009

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