Name: Escherichia fergusonii 568-73
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4930

Type strain:

Species: Escherichia fergusonii

Strain Designation: 568-73

Culture col. no.: DSM 13698, ATCC 35469, CDC 0568-73, CCUG 18766, JCM 21226, CIP 103357, CIP 104947, IAM 14443, LMG 7866, NBRC 102419, NCTC 12128

Strain history: CIP <- 1996, PAD Grimont, Inst. Pasteur, Paris, France <- CDC: strain 568-73 <- Missouri State Hlth. Dept.

NCBI tax ID(s): 585054 (strain), 564 (species)

SI-ID 2807

LMG 7866, ATCC 35469, CCUG 18766, DSM 13698, CIP 104947, CIP 103357, NCTC 12128, BCRC 15582, CCRC 15582, IAM 14443, NBRC 102419, JCM 21226

Special Collections

Other strains from Escherichia fergusonii

Section

When using BacDive for research please cite our paper

Escherichia fergusonii 568-73 is a facultative anaerobe, mesophilic, Gram-negative human pathogen that was isolated from faeces of 1-year-old boy.

Gram-negative
motile
rod-shaped
facultative anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Escherichia*
	Species	**Escherichia fergusonii**
	Full Scientific Name (LPSN)	Escherichia fergusonii Farmer et al. 1985

Information on morphological and physiological properties Morphology

[Ref.: #119305]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %99.75

[Ref.: #119305]	Cell shape	rod-shaped

[Ref.: #119305]	Motility	yes

[Ref.: #119305]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5121]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #5121]

Culture medium growth

[Ref.: #5121]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5121]

Culture medium composition

expand / minimize

[Ref.: #5121]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #5121]

Culture medium growth

[Ref.: #5121]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5121]

Culture medium composition

expand / minimize

[Ref.: #39147]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39147]

Culture medium growth

[Ref.: #39147]

Culture medium composition

expand / minimize

[Ref.: #119305]

Culture medium

CIP Medium 3

[Ref.: #119305]

Culture medium growth

[Ref.: #119305]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119305]

Culture medium

CIP Medium 72

[Ref.: #119305]

Culture medium growth

[Ref.: #119305]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #5121]	growth	37 °C
[Ref.: #39147]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #119305]	growth	5-41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119305]

Oxygen tolerance

facultative anaerobe

[Ref.: #125439]

Ability of spore formation

no Confidence in %92.6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119305]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119305]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119305]	glucose ChEBI	+	fermentation
[Ref.: #119305]	glucose ChEBI	+	degradation
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119305]	lactose ChEBI	-	fermentation
[Ref.: #119305]	malonate ChEBI	+	assimilation
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119305]	mannitol ChEBI	+	fermentation
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119305]	nitrate ChEBI	+	reduction
[Ref.: #119305]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119305]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119305]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #119305]		indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119305]		acetoin ChEBI	-
[Ref.: #119305]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119305]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119305]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119305]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119305]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119305]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119305]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #119305]	oxidase	-
[Ref.: #119305]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119305]	tryptophan deaminase	-
[Ref.: #119305]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119305]	9840	not determinedn.d.	+/-	-	-	+	+	+	-	+/-	-	+/-	+/-	+/-	+/-	-	+	-	-	+/-	-	-	-	+	-	+/-	+/-	+/-	+	+	+/-	+/-	-	+	-	-	+/-	-	-	-	+/-	-	-	-	-	-	+	-	+	+	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119305]	925	not determinedn.d.	+	+	+	+	-	-	-	-	-	+	-	-	-	-	-	+	-	+	-	+	+	+	-	+	-	-	+	-	-	-	-	+	-	+	-	-	-	+	-	-	+	-	-	+	+	-	-	-	-	+	-	-	-	-	+	+	+	-	-	+	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119305]	8324	-	+	+	+	-	+	-	-	-	-	+	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5121]	Sample type/isolated from	faeces of 1-year-old boy
[Ref.: #5121]	Geographic location (country and/or sea, region)	Missouri
[Ref.: #5121]	Country	USA
[Ref.: #5121]	Country ISO 3 Code	USA
[Ref.: #5121]	Continent	North America

[Ref.: #46882]	Sample type/isolated from	Feces,1-yr-old boy
[Ref.: #46882]	Country	USA
[Ref.: #46882]	Country ISO 3 Code	USA
[Ref.: #46882]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human stool

[Ref.: #119305]	Sample type/isolated from	Human, Child, feces
[Ref.: #119305]	Geographic location (country and/or sea, region)	Michigan
[Ref.: #119305]	Country	United States of America
[Ref.: #119305]	Country ISO 3 Code	USA
[Ref.: #119305]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Child

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF530475 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	5613
Soil Samples	2111
Animal Samples	88071
Plant Samples	1835
Total Samples	97630

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5121]	Pathogenicity (human)	yes
[Ref.: #5121]	Pathogenicity (animal)	yes
[Ref.: #5121]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119305]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Escherichia fergusonii strain ATCC 35469 16S ribosomal RNA gene, partial sequence	KP941767	882	GenBank ENA	564 tax ID
[Ref.: #124043]	Escherichia fergusonii ATCC 35469 gene for 16S rRNA, partial sequence.	LC752358	587	GenBank ENA	585054 tax ID	*
[Ref.: #20218]	Escherichia fergusonii 16S ribosomal RNA gene, partial sequence	AF530475	1473	GenBank ENA	585054 tax ID	*
[Ref.: #124043]	Escherichia fergusonii ATCC 35469 16S ribosomal RNA gene, partial sequence.	OR660252	1092	GenBank ENA	585054 tax ID	*
[Ref.: #20218]	Escherichia fergusonii gene for 16S rRNA, partial sequence, strain: NBRC 102419	AB681775	1467	GenBank ENA	564 tax ID	*
[Ref.: #124043]	Escherichia fergusonii partial 16S rRNA gene, strain ATCC 35469, isolate a5, clone a5	LS992079	779	GenBank ENA	585054 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Escherichia fergusonii NCTC12128	GCA_900450565	contig	GenBank ENA	564 tax ID
[Ref.: #66792]	Escherichia fergusonii strain FDAARGOS_1499	564.285	complete	PATRIC	564 tax ID	*
[Ref.: #66792]	Escherichia fergusonii ATCC 35469	585054.5	complete	PATRIC	585054 tax ID	*
[Ref.: #66792]	Escherichia fergusonii ATCC 35469 strain type strain: ATCC 35469 strain ATCC 35469T	585054.21	plasmid	PATRIC	585054 tax ID	*
[Ref.: #66792]	Escherichia fergusonii strain FDAARGOS_1499	564.206	complete	PATRIC	564 tax ID	*
[Ref.: #66792]	Escherichia fergusonii strain NCTC12128	564.28	wgs	PATRIC	564 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Escherichia fergusonii ATCC 35469 ATCC 35469T NCBI: GCA_000026225.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.75	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.905	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	72.922	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	87.825	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	77.851	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Escherichia fergusonii ATCC 35469 ATCC 35469T NCBI: GCA_000026225
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	92.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	50.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	88.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	88.8

Availability in culture collections External links

[Ref.: #5121]

Culture collection no.

DSM 13698, ATCC 35469, CDC 0568-73, CCUG 18766, JCM 21226, CIP 103357, CIP 104947, IAM 14443, LMG 7866, NBRC 102419, NCTC 12128

[Ref.: #74427]

SI-ID 2807

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Intestinirhabdus alba gen. nov., sp. nov., a novel genus of the family Enterobacteriaceae, isolated from the gut of plastic-eating larvae of the Coleoptera insect Zophobas atratus.	Xu Z, Xia M, Huo YX, Yang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004364	2020	*
Phylogeny	Multiplex polymerase chain reaction for identification of Escherichia coli, Escherichia albertii and Escherichia fergusonii.	Lindsey RL, Garcia-Toledo L, Fasulo D, Gladney LM, Strockbine N	J Microbiol Methods	10.1016/j.mimet.2017.06.005	2017	*
Phylogeny	Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana.	Liu S, Jin D, Lan R, Wang Y, Meng Q, Dai H, Lu S, Hu S, Xu J	Int J Syst Evol Microbiol	10.1099/ijs.0.000228	2015	*
Metabolism	Degradation of curcuminoids by in vitro pure culture fermentation.	Tan S, Rupasinghe TW, Tull DL, Boughton B, Oliver C, McSweeny C, Gras SL, Augustin MA	J Agric Food Chem	10.1021/jf5031168	2014	*
Phylogeny	Pathogenic and multidrug-resistant Escherichia fergusonii from broiler chicken.	Forgetta V, Rempel H, Malouin F, Vaillancourt R Jr, Topp E, Dewar K, Diarra MS	Poult Sci	10.3382/ps.2011-01738	2012	*
Phylogeny	Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens.	Farmer JJ 3rd, Fanning GR, Davis BR, O'Hara CM, Riddle C, Hickman-Brenner FW, Asbury MA, Lowery VA 3rd, Brenner DJ	J Clin Microbiol	10.1128/jcm.21.1.77-81.1985	1985	*
	Crystal structure of the BREX phage defence protein BrxA.	Beck IN, Picton DM, Blower TR	Curr Res Struct Biol	10.1016/j.crstbi.2022.06.001	2022	*

References

#5121

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13698

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39147 ; Curators of the CIP;
#46882 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18766

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#74427

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2807.1 )

#119305 Collection of Institut Pasteur ; Curators of the CIP; CIP 104947

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Search for species Escherichia fergusonii in external resources:
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BRENDA
PANGAEA
GBIF

Escherichia fergusonii ATCC 35469 ATCC 35469T

Escherichia fergusonii ATCC 35469 ATCC 35469T

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