Name: Lelliottia amnigena DSM 4486
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4359

Type strain:

Species: Lelliottia amnigena

Culture col. no.: DSM 4486, ATCC 33072, LMG 2784, CCUG 14182, CECT 4078, JCM 1237, NCTC 12124, CUETM 77-118, BCRC 13987, CCM 3430, CIP 103169, HAMBI 1297, HUT 8113, NBRC 105700, NCIMB 2118, VTT E-97863

Strain history: CIP <- 1988, F. Gavini, INSERM, Villeneuve d'Ascq, France: strain CUETM 77-118

NCBI tax ID(s): 1219085 (strain), 61646 (species)

SI-ID 2193

LMG 2784, ATCC 33072, CCM 3430, CCUG 14182, JCM 1237, CECT 4078, CIP 103169, NCTC 12124, DSM 4486, CCRC 13987, NCIMB 2118, HUT 8113, BCRC 13987, HAMBI 1297, CDBB 962, CNCTC 5730, VTT E-97863

Special Collections

Other strains from Lelliottia amnigena

Section

Lelliottia amnigena DSM 4486 is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Lelliottia*
	Species	**Lelliottia amnigena**
	Full Scientific Name (LPSN)	Lelliottia amnigena (Izard et al. 1981) Brady et al. 2013

Synonym

Enterobacter amnigenus

Information on morphological and physiological properties Morphology

[Ref.: #116343]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #116343]	Cell shape	rod-shaped

[Ref.: #116343]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1699]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #1699]

Culture medium growth

[Ref.: #1699]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1699]

Culture medium composition

expand / minimize

[Ref.: #1699]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #1699]

Culture medium growth

[Ref.: #1699]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1699]

Culture medium composition

expand / minimize

[Ref.: #34586]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34586]

Culture medium growth

[Ref.: #34586]

Culture medium composition

expand / minimize

[Ref.: #116343]

Culture medium

CIP Medium 72

[Ref.: #116343]

Culture medium growth

[Ref.: #116343]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116343]

Culture medium

CIP Medium 3

[Ref.: #116343]

Culture medium growth

[Ref.: #116343]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1699]		growth	30 °C
[Ref.: #34586]		growth	30 °C
[Ref.: #46036]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #116343]		growth	10-37 °C
[Ref.: #116343]	no	growth	5 °C
[Ref.: #116343]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46036]	Oxygen tolerance	aerobe
[Ref.: #116343]	Oxygen tolerance	facultative anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116343]	citrate ChEBI	+	carbon source
[Ref.: #116343]	glucose ChEBI	+	fermentation
[Ref.: #116343]	lactose ChEBI	-	fermentation
[Ref.: #116343]	malonate ChEBI	+	assimilation
[Ref.: #116343]	mannitol ChEBI	+	fermentation
[Ref.: #116343]	nitrate ChEBI	+	reduction
[Ref.: #116343]	nitrite ChEBI	-	reduction
[Ref.: #116343]	sodium thiosulfate ChEBI	-	builds gas from

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116343]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #116343]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116343]		acetoin ChEBI	+
[Ref.: #116343]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116343]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116343]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116343]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116343]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116343]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116343]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #116343]	oxidase	-
[Ref.: #116343]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116343]	tryptophan deaminase	-
[Ref.: #116343]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #46036]

Fatty acid	Percentage	ECL
C16:1 ω7c	39	15.819
C16:0	21.4	16
C18:1 ω7c /12t/9t	11.5	17.824
C14:0 3OH/C16:1 ISO I	7.4	15.485
C14:0	5.5	14
C15:0	4.9	15
C17:0 CYCLO	4	16.888
C12:0	3	12
C17:0	1.5	17
C13:0 3OH/C15:1 i I/H	0.7	14.469
C13:0	0.6	13
C17:1 ω8c	0.6	16.792

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116343]	338	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-	-	-	+	-	+	+	+	-	-	-	+	-	+	-	+	+	-	-	-	-	+	-	-	-	+	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116343]	7401	-	+	+	+	-	+	+	-	-	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1699]	Sample type/isolated from	soil

[Ref.: #46036]	Sample type/isolated from	Soil

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #116343]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB004749 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	433
Soil Samples	276
Animal Samples	1728
Plant Samples	544
Total Samples	2981

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1699]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116343]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1699]	Enterobacter amnigenus gene for 16S ribosomal RNA, partial sequence	AB004749	1449	GenBank ENA	61646 tax ID
[Ref.: #124043]	Enterobacter amnigenus gene for 16S rRNA, partial sequence, strain: NBRC 105700.	AB682273	1402	GenBank ENA	1219085 tax ID	*
[Ref.: #124043]	Lelliottia amnigena strain JCM 1237 16S ribosomal RNA gene, partial sequence.	MN527025	489	GenBank ENA	61646 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lelliottia amnigena NCTC12124	GCA_900635465	complete	GenBank ENA	61646 tax ID
[Ref.: #67770]	Lelliottia amnigena LMG 2784	GCA_002553545	contig	GenBank ENA	61646 tax ID
[Ref.: #67770]	Lelliottia amnigena NBRC 105700	GCA_001514515	contig	GenBank ENA	1219085 tax ID
[Ref.: #66792]	Lelliottia amnigena strain FDAARGOS 1444	61646.97	complete	PATRIC	61646 tax ID	*
[Ref.: #66792]	Lelliottia amnigena strain NCTC12124	61646.72	complete	PATRIC	61646 tax ID	*
[Ref.: #66792]	Lelliottia amnigena LMG 2784	2837279015	draft	JGI IMG/M	61646 tax ID	*

[Ref.: #67770]

GC-content

54.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lelliottia amnigena NCTC12124 NCBI: GCA_900635465.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.12	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	64.191	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.882	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	100	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.275	no

Availability in culture collections External links

[Ref.: #1699]

Culture collection no.

DSM 4486, ATCC 33072, LMG 2784, CCUG 14182, CECT 4078, JCM 1237, NCTC 12124, CUETM 77-118, BCRC 13987, CCM 3430, CIP 103169, HAMBI 1297, HUT 8113, NBRC 105700, NCIMB 2118, VTT E-97863

[Ref.: #73850]

SI-ID 2193

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lelliottia jeotgali sp. nov., isolated from a traditional Korean fermented clam.	Yuk KJ, Kim YT, Huh CS, Lee JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002737	2018	*
Phylogeny	Lelliottia steviae sp. nov. isolated from Stevia rebaudiana Bertoni.	Lin J, Huang K, Huang JY, Xiong YR, Wei MM, Xiao N, Gao J, Ding XK, Ma ZY, Sang JH, Kong LX, Hong ZY, Li O	Arch Microbiol	10.1007/s00203-022-03033-2	2022	*

References

#1699

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4486

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34586 ; Curators of the CIP;
#46036 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14182

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73850

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2193.1 )

#116343 Collection of Institut Pasteur ; Curators of the CIP; CIP 103169

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Lelliottia amnigena NCTC12124

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