Lelliottia amnigena (DSM 30055, WS 10111)

Name: Lelliottia amnigena (DSM 30055, WS 10111)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23993

Type strain

Strain Designation WS 10111

Culture col. no. DSM 30055 WS 10111

NCBI tax ID(s) 61646

Special Collections DSMZ

Links

Lelliottia amnigena WS 10111 is a mesophilic prokaryote that was isolated from chicken.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 113616

DSM 30055

@ref 20215

Last LPSN update 2025-12-16 09:52:46

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Lelliottia

Species Lelliottia amnigena

Full scientific name Lelliottia amnigena (Izard et al. 1981) Brady et al. 2013

Synonyms (1)

Enterobacter amnigenus

BacDive ID	Other strains from **Lelliottia amnigena** (10)	Type strain
4359	L. amnigena DSM 4486, ATCC 33072, LMG 2784, CCUG 14182, ... (type strain)
22997	L. amnigena WS 21711, DSM 30114
23994	L. amnigena WS 10225, DSM 30057
23995	L. amnigena 21824, DSM 30059
134472	L. amnigena 78.100, CIP 104982
136588	L. amnigena CIP 104958, CUETM 7878
139415	L. amnigena 290-86, CIP 102311
154828	L. amnigena CCUG 55352
163284	L. amnigena JCM 24158, CUETM 77-114
163285	L. amnigena JCM 24159, CUETM 77-132

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.3
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20540	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20540	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	92.1

Spore formation

@ref	Spore formation	Confidence
125439		95.2
125438		90.382

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken

Isolation

20540

Sample typechicken

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20540	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1935595v1 assembly for Lelliottia amnigena FDAARGOS_1445	chromosome	GCA_019355955	61646.100	8075257736	61646	89.39

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lelliottia amnigena strain FDAARGOS_1445
PATRIC: 61646.100

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.20	no
125439	motility	BacteriaNetⓘ	yes	71.90	no
125439	gram_stain	BacteriaNetⓘ	negative	96.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lelliottia amnigena strain FDAARGOS_1445 strain Not applicable
PATRIC: 61646.100

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.43	no
125438	spore-forming	spore-formingⓘ	no	90.38	no
125438	aerobic	aerobicⓘ	no	65.24	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	77.01	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20540	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30055
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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