Name: Alicyclobacillus ferrooxydans TC-34
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 435

Type strain:

Species: Alicyclobacillus ferrooxydans

Strain Designation: TC-34

Culture col. no.: DSM 22381, CGMCC 1.6357, JCM 15090

Strain history: C.-Y. Jiang TC-34.

NCBI tax ID(s): 471514 (species)

SI-ID 407747

DSM 22381

Special Collections

Section

Alicyclobacillus ferrooxydans TC-34 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from solfatoric soil.

Gram-positive
ovoid-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Alicyclobacillus*
	Species	**Alicyclobacillus ferrooxydans**
	Full Scientific Name (LPSN)	Alicyclobacillus ferrooxydans Jiang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31191]	Gram stain	positive

[Ref.: #31191]	Cell length	1-1.5 µm

[Ref.: #31191]	Cell width	0.4-0.6 µm

[Ref.: #31191]	Cell shape	ovoid-shaped

[Ref.: #31191]	Motility	no

[Ref.: #31191]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16316]

Culture medium

ALICYCLOBACILLUS FERROOXYDANS MEDIUM (DSMZ Medium 1201)

[Ref.: #16316]

Culture medium growth

[Ref.: #16316]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16316]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16316]	growth	30 °C
[Ref.: #31191]	growth	17-40 °C
[Ref.: #31191]	optimum	28 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31191]			optimum	3
[Ref.: #31191]			growth	02-06

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31191]

Oxygen tolerance

aerobe

[Ref.: #31191]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31191]		NaCl		growth	0-3	%
[Ref.: #31191]		NaCl		optimum	0-3	%

[Ref.: #31191]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31191]	arabinose ChEBI	+	carbon source
[Ref.: #31191]	cellobiose ChEBI	+	carbon source
[Ref.: #31191]	fructose ChEBI	+	carbon source
[Ref.: #31191]	fucose ChEBI	+	carbon source
[Ref.: #31191]	galactose ChEBI	+	carbon source
[Ref.: #31191]	glucose ChEBI	+	carbon source
[Ref.: #31191]	maltose ChEBI	+	carbon source
[Ref.: #31191]	mannose ChEBI	+	carbon source
[Ref.: #31191]	sorbitol ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31191]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31191]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31191]		catalase	+	1.11.1.6
[Ref.: #31191]		cytochrome oxidase	+	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	degradation of pentoses	75	21 of 28
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	purine metabolism	72.34	68 of 94
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	chorismate metabolism	66.67	6 of 9
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	heme metabolism	57.14	8 of 14
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	pyrimidine metabolism	48.89	22 of 45
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	vitamin B12 metabolism	44.12	15 of 34
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	chlorophyll metabolism	33.33	6 of 18
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16316]	Sample type/isolated from	solfatoric soil
[Ref.: #16316]	Geographic location (country and/or sea, region)	Tengcong county, Yunnan province
[Ref.: #16316]	Country	China
[Ref.: #16316]	Country ISO 3 Code	CHN
[Ref.: #16316]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Solfataric soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tengchong, Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU137838 (>99% sequence identity) for Alicyclobacillus ferrooxydans subclade from Microbeatlas

Aquatic Samples	168
Soil Samples	238
Animal Samples	1408
Plant Samples	50
Total Samples	1864

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16316]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16316]	Alicyclobacillus ferrooxydans strain TC-34 16S ribosomal RNA gene, partial sequence	EU137838	1496	GenBank ENA	471514 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alicyclobacillus ferrooxydans TC-34	GCA_001399675	contig	GenBank ENA	471514 tax ID
[Ref.: #66792]	Alicyclobacillus ferrooxydans strain TC-34	471514.4	wgs	PATRIC	471514 tax ID	*
[Ref.: #66792]	Alicyclobacillus ferrooxydans TC-34	2713896827	draft	JGI IMG/M	471514 tax ID	*

[Ref.: #16316]	GC-content	48.6 mol%
[Ref.: #67770]	GC-content	48.6 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alicyclobacillus ferrooxydans strain TC-34 PATRIC: 471514.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	65.101	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.188	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.367	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.021	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	81.042	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	73.246	no

Availability in culture collections External links

[Ref.: #16316]

Culture collection no.

DSM 22381, CGMCC 1.6357, JCM 15090

[Ref.: #70114]

SI-ID 407747

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alicyclobacillus curvatus sp. nov. and Alicyclobacillus mengziensis sp. nov., two acidophilic bacteria isolated from acid mine drainage.	Jiang Z, Wu D, Liang ZL, Li XT, Huang Y, Zhou N, Liu ZH, Zhang GJ, Jia Y, Yin HQ, Liu SJ, Jiang CY	Int J Syst Evol Microbiol	10.1099/ijsem.0.005285	2022	*
Phylogeny	Alicyclobacillus tengchongensis sp. nov., a thermo-acidophilic bacterium isolated from hot spring soil.	Kim MG, Lee JC, Park DJ, Li WJ, Kim CJ	J Microbiol	10.1007/s12275-014-3625-z	2014	*
Phylogeny	Alicyclobacillus ferrooxydans sp. nov., a ferrous-oxidizing bacterium from solfataric soil.	Jiang CY, Liu Y, Liu YY, You XY, Guo X, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000562-0	2008	*

References

#16316

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22381

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31191

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27518 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#70114

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407747.1 )

#27518

IJSEM 2898 2008 ( DOI 10.1099/ijs.0.2008/000562-0 , PubMed 19060079 )

* These data were automatically processed and therefore are not curated

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Alicyclobacillus ferrooxydans strain TC-34

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