Alicyclobacillus ferrooxydans (DSM 22381, CGMCC 1.6357, JCM 15090)

Name: Alicyclobacillus ferrooxydans (DSM 22381, CGMCC 1.6357, JCM 15090)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 435

Type strain

Strain Designation TC-34

Culture col. no. DSM 22381 CGMCC 1.6357 JCM 15090 TC-34

NCBI tax ID(s) 471514

Special Collections DSMZ JCM Literature strains

History <- JCM/RIKEN; JCM 15090 <- C.-Y. Jiang, Chinese Acad. Sci. (CAS), Beijing; TC-34 C.-Y. Jiang TC-34.

Links

Alicyclobacillus ferrooxydans TC-34 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from solfatoric soil.

spore-forming Gram-positive ovoid-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407747

JCM 15090,DSM 22381

@ref 20215

Last LPSN update 2026-02-09 11:17:52

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Alicyclobacillaceae

Genus Alicyclobacillus

Species Alicyclobacillus ferrooxydans

Full scientific name Alicyclobacillus ferrooxydans Jiang et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31191	positive	1-1.5 µm	0.4-0.6 µm	ovoid-shaped

Pigmentation

31191

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16316	ALICYCLOBACILLUS FERROOXYDANS MEDIUM (DSMZ Medium 1201)		Medium recipe at MediaDive	Name: ALICYCLOBACILLUS FERROOXYDANS MEDIUM (DSMZ Medium 1201) Composition: FeSO4 x 7 H2O 14.0 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.4 g/l Yeast extract 0.2 g/l K2HPO4 0.2 g/l K2S4O6 0.15 g/l KCl 0.1 g/l MnSO4 x H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16316	positive	growth	30	mesophilic
31191	positive	growth	17-40
31191	positive	optimum	28	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31191	positive	optimum	3
31191	positive	growth	02-06	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31191	aerobe
125439	obligate aerobe	96.6

Spore formation

31191

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31191	NaCl	positive	growth	0-3 %
31191	NaCl	positive	optimum	0-3 %

Observation

@ref	Observation
31191	aggregates in clumps
67770	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31191	22599 ChEBI	arabinose	+	carbon source
31191	17057 ChEBI	cellobiose	+	carbon source
31191	28757 ChEBI	fructose	+	carbon source
31191	33984 ChEBI	fucose	+	carbon source
31191	28260 ChEBI	galactose	+	carbon source
31191	17234 ChEBI	glucose	+	carbon source
31191	17306 ChEBI	maltose	+	carbon source
31191	37684 ChEBI	mannose	+	carbon source
31191	30911 ChEBI	sorbitol	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31191	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
31191	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
31191	catalase	+	1.11.1.6
31191	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	lipoate biosynthesis	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ethanol fermentation	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	cellulose degradation	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	vitamin B1 metabolism	92.31	12 of 13
66794	propionate fermentation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	Entner Doudoroff pathway	80	8 of 10
66794	3-chlorocatechol degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	citric acid cycle	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	d-mannose degradation	77.78	7 of 9
66794	methionine metabolism	76.92	20 of 26
66794	glycogen biosynthesis	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	degradation of pentoses	75	21 of 28
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	vitamin B6 metabolism	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	proline metabolism	72.73	8 of 11
66794	purine metabolism	72.34	68 of 94
66794	NAD metabolism	72.22	13 of 18
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	chorismate metabolism	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	enterobactin biosynthesis	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	UDP-GlcNAc biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	tyrosine metabolism	64.29	9 of 14
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	histidine metabolism	58.62	17 of 29
66794	heme metabolism	57.14	8 of 14
66794	lipid metabolism	54.84	17 of 31
66794	arginine metabolism	54.17	13 of 24
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	myo-inositol biosynthesis	50	5 of 10
66794	degradation of hexoses	50	9 of 18
66794	lysine metabolism	50	21 of 42
66794	selenocysteine biosynthesis	50	3 of 6
66794	lactate fermentation	50	2 of 4
66794	androgen and estrogen metabolism	50	8 of 16
66794	glycine metabolism	50	5 of 10
66794	suberin monomers biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	pyrimidine metabolism	48.89	22 of 45
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	sulfate reduction	46.15	6 of 13
66794	vitamin B12 metabolism	44.12	15 of 34
66794	degradation of sugar acids	44	11 of 25
66794	polyamine pathway	43.48	10 of 23
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine betaine biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	carnitine metabolism	37.5	3 of 8
66794	ascorbate metabolism	36.36	8 of 22
66794	metabolism of disaccharids	36.36	4 of 11
66794	octane oxidation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	chlorophyll metabolism	33.33	6 of 18
66794	arachidonic acid metabolism	33.33	6 of 18
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	allantoin degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	cholesterol biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	carotenoid biosynthesis	22.73	5 of 22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Volcanic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16316	solfatoric soil	Tengchong county, Yunnan province	China	CHN	Asia
67770	Solfataric soil	Tengchong, Yunnan Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU137838 (>99% sequence identity) for Alicyclobacillus ferrooxydans subclade from Microbeatlas

Aquatic Samples	168
Soil Samples	238
Animal Samples	1408
Plant Samples	50
Total Samples	1864

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16316	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM139967v1 assembly for Alicyclobacillus ferrooxydans TC-34	contig	GCA_001399675	471514.4	2713896827	471514	46.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16316	Alicyclobacillus ferrooxydans strain TC-34 16S ribosomal RNA gene, partial sequence	EU137838	1496		471514

GC content

@ref	GC-content (mol%)	Method
16316	48.6
67770	48.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alicyclobacillus ferrooxydans TC-34
NCBI: GCA_001399675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	51.60	no
125439	motility	BacteriaNetⓘ	yes	67.40	no
125439	gram_stain	BacteriaNetⓘ	positive	67.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alicyclobacillus ferrooxydans strain TC-34
PATRIC: 471514.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.10	no
125438	anaerobic	anaerobicⓘ	no	94.19	yes
125438	spore-forming	spore-formingⓘ	yes	87.37	no
125438	aerobic	aerobicⓘ	yes	77.02	no
125438	thermophilic	thermophileⓘ	no	81.04	yes
125438	flagellated	motile2+ⓘ	yes	73.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alicyclobacillus curvatus sp. nov. and Alicyclobacillus mengziensis sp. nov., two acidophilic bacteria isolated from acid mine drainage.	Jiang Z, Wu D, Liang ZL, Li XT, Huang Y, Zhou N, Liu ZH, Zhang GJ, Jia Y, Yin HQ, Liu SJ, Jiang CY	Int J Syst Evol Microbiol	10.1099/ijsem.0.005285	2022
Phylogeny	Alicyclobacillus tengchongensis sp. nov., a thermo-acidophilic bacterium isolated from hot spring soil.	Kim MG, Lee JC, Park DJ, Li WJ, Kim CJ	J Microbiol	10.1007/s12275-014-3625-z	2014
Phylogeny	Alicyclobacillus ferrooxydans sp. nov., a ferrous-oxidizing bacterium from solfataric soil.	Jiang CY, Liu Y, Liu YY, You XY, Guo X, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000562-0	2008

References

#16316	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22381
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27518	IJSEM 2898 2008 ( DOI 10.1099/ijs.0.2008/000562-0 , PubMed 19060079 )
#31191	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27518
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alicyclobacillus ferrooxydans (DSM 22381, CGMCC 1.6357, JCM 15090)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001399675

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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