Strain identifier
BacDive ID: 435
Type strain:
Species: Alicyclobacillus ferrooxydans
Strain Designation: TC-34
Strain history: C.-Y. Jiang TC-34.
NCBI tax ID(s): 471514 (species)
General
@ref: 16316
BacDive-ID: 435
DSM-Number: 22381
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, ovoid-shaped
description: Alicyclobacillus ferrooxydans TC-34 is an aerobe, spore-forming, mesophilic bacterium that was isolated from solfatoric soil.
NCBI tax id
- NCBI tax id: 471514
- Matching level: species
strain history
@ref | history |
---|---|
16316 | <- JCM/RIKEN; JCM 15090 <- C.-Y. Jiang, Chinese Acad. Sci. (CAS), Beijing; TC-34 |
67770 | C.-Y. Jiang TC-34. |
doi: 10.13145/bacdive435.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Alicyclobacillaceae
- genus: Alicyclobacillus
- species: Alicyclobacillus ferrooxydans
- full scientific name: Alicyclobacillus ferrooxydans Jiang et al. 2008
@ref: 16316
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Alicyclobacillaceae
genus: Alicyclobacillus
species: Alicyclobacillus ferrooxydans
full scientific name: Alicyclobacillus ferrooxydans Jiang et al. 2008
strain designation: TC-34
type strain: yes
Morphology
cell morphology
- @ref: 31191
- gram stain: positive
- cell length: 1-1.5 µm
- cell width: 0.4-0.6 µm
- cell shape: ovoid-shaped
- motility: no
pigmentation
- @ref: 31191
- production: yes
Culture and growth conditions
culture medium
- @ref: 16316
- name: ALICYCLOBACILLUS FERROOXYDANS MEDIUM (DSMZ Medium 1201)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1201
- composition: Name: ALICYCLOBACILLUS FERROOXYDANS MEDIUM (DSMZ Medium 1201) Composition: FeSO4 x 7 H2O 14.0 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.4 g/l Yeast extract 0.2 g/l K2HPO4 0.2 g/l K2S4O6 0.15 g/l KCl 0.1 g/l MnSO4 x H2O 0.01 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16316 | positive | growth | 30 | mesophilic |
31191 | positive | growth | 17-40 | |
31191 | positive | optimum | 28 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31191 | positive | growth | 02-06 | acidophile |
31191 | positive | optimum | 3 |
Physiology and metabolism
oxygen tolerance
- @ref: 31191
- oxygen tolerance: aerobe
spore formation
- @ref: 31191
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31191 | NaCl | positive | growth | 0-3 % |
31191 | NaCl | positive | optimum | 0-3 % |
observation
@ref | observation |
---|---|
31191 | aggregates in clumps |
67770 | quinones: MK-7 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31191 | 22599 | arabinose | + | carbon source |
31191 | 17057 | cellobiose | + | carbon source |
31191 | 28757 | fructose | + | carbon source |
31191 | 33984 | fucose | + | carbon source |
31191 | 28260 | galactose | + | carbon source |
31191 | 17234 | glucose | + | carbon source |
31191 | 17306 | maltose | + | carbon source |
31191 | 37684 | mannose | + | carbon source |
31191 | 30911 | sorbitol | + | carbon source |
metabolite production
- @ref: 31191
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 31191
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
31191 | catalase | + | 1.11.1.6 |
31191 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16316 | solfatoric soil | Tengcong county, Yunnan province | China | CHN | Asia |
67770 | Solfataric soil | Tengchong, Yunnan Province | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Environmental | #Terrestrial | #Volcanic |
taxonmaps
- @ref: 69479
- File name: preview.99_2997.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_313;96_1575;97_1881;98_2309;99_2997&stattab=map
- Last taxonomy: Alicyclobacillus ferrooxydans subclade
- 16S sequence: EU137838
- Sequence Identity:
- Total samples: 1864
- soil counts: 238
- aquatic counts: 168
- animal counts: 1408
- plant counts: 50
Safety information
risk assessment
- @ref: 16316
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16316
- description: Alicyclobacillus ferrooxydans strain TC-34 16S ribosomal RNA gene, partial sequence
- accession: EU137838
- length: 1496
- database: ena
- NCBI tax ID: 471514
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Alicyclobacillus ferrooxydans strain TC-34 | 471514.4 | wgs | patric | 471514 |
66792 | Alicyclobacillus ferrooxydans TC-34 | 2713896827 | draft | img | 471514 |
67770 | Alicyclobacillus ferrooxydans TC-34 | GCA_001399675 | contig | ncbi | 471514 |
GC content
@ref | GC-content | method |
---|---|---|
16316 | 48.6 | |
67770 | 48.6 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | yes | 86.125 | yes |
anaerobic | no | 97.77 | yes |
halophile | no | 92.697 | no |
spore-forming | yes | 94.284 | yes |
glucose-util | yes | 88.447 | yes |
aerobic | yes | 83.532 | yes |
flagellated | no | 54.557 | no |
thermophile | no | 59.458 | yes |
motile | yes | 73.56 | yes |
glucose-ferment | no | 89.246 | no |
External links
@ref: 16316
culture collection no.: DSM 22381, CGMCC 1.6357, JCM 15090
straininfo link
- @ref: 70114
- straininfo: 407747
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19060079 | Alicyclobacillus ferrooxydans sp. nov., a ferrous-oxidizing bacterium from solfataric soil. | Jiang CY, Liu Y, Liu YY, You XY, Guo X, Liu SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.2008/000562-0 | 2008 | Bacillaceae/chemistry/*classification/genetics/*physiology, Fatty Acids/analysis, Iron/*metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity | Genetics |
Phylogeny | 25037879 | Alicyclobacillus tengchongensis sp. nov., a thermo-acidophilic bacterium isolated from hot spring soil. | Kim MG, Lee JC, Park DJ, Li WJ, Kim CJ | J Microbiol | 10.1007/s12275-014-3625-z | 2014 | Aerobiosis, Alicyclobacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hot Springs, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Peptidoglycan/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, Vitamin K 2/analysis | Genetics |
Phylogeny | 35312474 | Alicyclobacillus curvatus sp. nov. and Alicyclobacillus mengziensis sp. nov., two acidophilic bacteria isolated from acid mine drainage. | Jiang Z, Wu D, Liang ZL, Li XT, Huang Y, Zhou N, Liu ZH, Zhang GJ, Jia Y, Yin HQ, Liu SJ, Jiang CY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005285 | 2022 | *Alicyclobacillus, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
16316 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22381) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22381 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
31191 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27518 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
70114 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407747.1 | StrainInfo: A central database for resolving microbial strain identifiers |