Name: Alicyclobacillus sendaiensis NTAP-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 427

Type strain:

Species: Alicyclobacillus sendaiensis

Strain Designation: NTAP-1

Culture col. no.: DSM 17614, ATCC BAA-609, JCM 11817, KCTC 3843, NBRC 100866

Strain history: T. Nakayama NTAP-1 <-- N. Tsuruoka.

NCBI tax ID(s): 1220572 (strain), 192387 (species)

SI-ID 111788

JCM 11817, ATCC BAA-609, NBRC 100866, KCTC 3843, DSM 17614

Special Collections

Section

Alicyclobacillus sendaiensis NTAP-1 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Alicyclobacillus*
	Species	**Alicyclobacillus sendaiensis**
	Full Scientific Name (LPSN)	Alicyclobacillus sendaiensis Tsuruoka et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7087]

Culture medium

ALICYCLOBACILLUS MEDIUM (DSMZ Medium 402)

[Ref.: #7087]

Culture medium growth

[Ref.: #7087]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7087]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7087]			growth	50 °C
[Ref.: #67770]			growth	55 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7087]	Sample type/isolated from	soil
[Ref.: #7087]	Geographic location (country and/or sea, region)	Aoba-yama Park, Sendai
[Ref.: #7087]	Country	Japan
[Ref.: #7087]	Country ISO 3 Code	JPN
[Ref.: #7087]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of Aoba-yama Park
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sendai
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB084128 (>99% sequence identity) for Alicyclobacillus sendaiensis from Microbeatlas

Aquatic Samples	23
Soil Samples	30
Animal Samples	37
Plant Samples	15
Total Samples	105

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7087]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7087]	Alicyclobacillus sendaiensis gene for 16S rRNA	AB084128	1438	GenBank ENA	192387 tax ID
[Ref.: #20218]	Alicyclobacillus sendaiensis gene for 16S rRNA, partial sequence	AB222247	1523	GenBank ENA	192387 tax ID	*
[Ref.: #124043]	Alicyclobacillus sendaiensis gene for 16S rRNA, partial sequence, strain: NBRC 100866.	AB681271	1463	GenBank ENA	192387 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alicyclobacillus sendaiensis NBRC 100866	GCA_001552675	contig	GenBank ENA	1220572 tax ID
[Ref.: #66792]	Alicyclobacillus sendaiensis NBRC 100866	1220572.3	wgs	PATRIC	1220572 tax ID	*
[Ref.: #66792]	Alicyclobacillus sendaiensis NBRC 100866	2731957596	draft	JGI IMG/M	1220572 tax ID	*

[Ref.: #7087]	GC-content	62.3 mol%
[Ref.: #67770]	GC-content	62.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alicyclobacillus sendaiensis NBRC 100866 PATRIC: 1220572.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	76	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alicyclobacillus sendaiensis NBRC 100866 PATRIC: 1220572.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	70.476	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.219	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.165	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	74.176	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	66.718	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.788	no

Availability in culture collections External links

[Ref.: #7087]

Culture collection no.

DSM 17614, ATCC BAA-609, JCM 11817, KCTC 3843, NBRC 100866

[Ref.: #70106]

SI-ID 111788

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Efficient production of gluten hydrolase Kuma030 in E. coli by hot acid treatment without chromatography.	Liu H, Fan X, Song H, Hu X, Zhang G, Yu C, Yi L	Enzyme Microb Technol	10.1016/j.enzmictec.2019.05.013	2019	*
Phylogeny	Alicyclobacillus sendaiensis sp. nov., a novel acidophilic, slightly thermophilic species isolated from soil in Sendai, Japan.	Tsuruoka N, Isono Y, Shida O, Hemmi H, Nakayama T, Nishino T	Int J Syst Evol Microbiol	10.1099/ijs.0.02409-0	2003	*
Enzymology	Collagenolytic serine-carboxyl proteinase from Alicyclobacillus sendaiensis strain NTAP-1: purification, characterization, gene cloning, and heterologous expression.	Tsuruoka N, Nakayama T, Ashida M, Hemmi H, Nakao M, Minakata H, Oyama H, Oda K, Nishino T	Appl Environ Microbiol	10.1128/AEM.69.1.162-169.2003	2003	*

References

#7087

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17614

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70106

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID111788.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Alicyclobacillus sendaiensis NBRC 100866

Alicyclobacillus sendaiensis NBRC 100866

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