Name: Alicyclobacillus vulcanalis CsHg2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 425

Type strain:

Species: Alicyclobacillus vulcanalis

Strain Designation: CsHg2

Culture col. no.: DSM 16176

Strain history: <- P. Blum; CsHg2

NCBI tax ID(s): 252246 (species)

SI-ID 134274

ATCC BAA-915, DSM 16176, BCRC 17527, CCRC 17527

Special Collections

Section

Alicyclobacillus vulcanalis CsHg2 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hot spring pool water.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Alicyclobacillus*
	Species	**Alicyclobacillus vulcanalis**
	Full Scientific Name (LPSN)	Alicyclobacillus vulcanalis Simbahan et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30160]	Gram stain	positive

[Ref.: #30160]	Cell length	2 µm

[Ref.: #30160]	Cell width	0.55 µm

[Ref.: #30160]	Cell shape	rod-shaped

[Ref.: #30160]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6313]

Culture medium

ALICYCLOBACILLUS MEDIUM (DSMZ Medium 402)

[Ref.: #6313]

Culture medium growth

[Ref.: #6313]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6313]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6313]	growth	55 °C
[Ref.: #30160]	growth	35-65 °C
[Ref.: #30160]	optimum	55 °C

	pH	Kind of pH		pH
[Ref.: #30160]			optimum	4
[Ref.: #30160]			growth	2.0-6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30160]

Oxygen tolerance

aerobe

[Ref.: #30160]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30160]		NaCl		growth	<2	%
[Ref.: #30160]		NaCl		optimum	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30160]	arabinose ChEBI	+	carbon source
[Ref.: #30160]	cellobiose ChEBI	+	carbon source
[Ref.: #30160]	fructose ChEBI	+	carbon source
[Ref.: #30160]	galactose ChEBI	+	carbon source
[Ref.: #30160]	glucose ChEBI	+	carbon source
[Ref.: #30160]	glycerol ChEBI	+	carbon source
[Ref.: #30160]	glycogen ChEBI	+	carbon source
[Ref.: #30160]	maltose ChEBI	+	carbon source
[Ref.: #30160]	mannitol ChEBI	+	carbon source
[Ref.: #30160]	mannose ChEBI	+	carbon source
[Ref.: #30160]	melibiose ChEBI	+	carbon source
[Ref.: #30160]	raffinose ChEBI	+	carbon source
[Ref.: #30160]	ribose ChEBI	+	carbon source
[Ref.: #30160]	sucrose ChEBI	+	carbon source
[Ref.: #30160]	trehalose ChEBI	+	carbon source
[Ref.: #30160]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6313]	Sample type/isolated from	hot spring pool water
[Ref.: #6313]	Geographic location (country and/or sea, region)	California, Coso hot springs
[Ref.: #6313]	Country	USA
[Ref.: #6313]	Country ISO 3 Code	USA
[Ref.: #6313]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB222267 (>99% sequence identity) for Alicyclobacillus vulcanalis subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	26
Animal Samples	8
Plant Samples	2
Total Samples	41

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6313]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30160]	Alicyclobacillus vulcanis 16S ribosomal RNA gene, partial sequence	AY425985	1458	GenBank ENA	252246 tax ID
[Ref.: #20218]	Alicyclobacillus vulcanalis gene for 16S rRNA, partial sequence	AB222267	1488	GenBank ENA	252246 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alicyclobacillus vulcanalis DSM 16176	GCA_900156755	scaffold	GenBank ENA	252246 tax ID	*
[Ref.: #66792]	Alicyclobacillus vulcanalis strain DSM 16176	252246.3	wgs	PATRIC	252246 tax ID	*
[Ref.: #66792]	Alicyclobacillus vulcanalis DSM 16176	2681813550	draft	JGI IMG/M	252246 tax ID	*

[Ref.: #30160]

GC-content

62 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alicyclobacillus vulcanalis DSM 16176 NCBI: GCA_900156755.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	67	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alicyclobacillus vulcanalis DSM 16176 NCBI: GCA_900156755.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	71.014	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.003	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.023	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.971	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	62.201	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.288	no

Availability in culture collections External links

[Ref.: #6313]

Culture collection no.

DSM 16176

[Ref.: #70105]

SI-ID 134274

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Purification and Characterization of a Novel beta-Galactosidase From the Thermoacidophile Alicyclobacillus vulcanalis.	Murphy J, Ryan MP, Walsh G	Appl Biochem Biotechnol	10.1007/s12010-020-03233-w	2020	*
Phylogeny	Alicyclobacillus vulcanalis sp. nov., a thermophilic, acidophilic bacterium isolated from Coso Hot Springs, California, USA.	Simbahan J, Drijber R, Blum P	Int J Syst Evol Microbiol	10.1099/ijs.0.03012-0	2004	*

References

#6313

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16176

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30160

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26511 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70105

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134274.1 )

#26511

IJSEM 1703 2004 ( DOI 10.1099/ijs.0.03012-0 , PubMed 15388732 )

* These data were automatically processed and therefore are not curated

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Alicyclobacillus vulcanalis DSM 16176

Alicyclobacillus vulcanalis DSM 16176

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