Name: Alicyclobacillus pomorum 3A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 424

Type strain:

Species: Alicyclobacillus pomorum

Strain Designation: 3A

Culture col. no.: DSM 14955, IAM 14988, JCM 21459, CIP 108162, NBRC 100861

Strain history: IAM 14988 <-- K. Goto 3A.

NCBI tax ID(s): 1111479 (strain), 204470 (species)

Section

Alicyclobacillus pomorum 3A is a thermophilic bacterium that was isolated from mixed fruit juice.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Alicyclobacillus*
	Species	**Alicyclobacillus pomorum**
	Full Scientific Name (PNU)	Alicyclobacillus pomorum Goto et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5618]

Culture medium

ALICYCLOBACILLUS MEDIUM (DSMZ Medium 402)

[Ref.: #5618]

Culture medium growth

[Ref.: #5618]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5618]

Culture medium composition

expand / minimize

[Ref.: #39775]

Culture medium

MEDIUM 313 - for Alicyclobacillus acidoterrestris

[Ref.: #39775]

Culture medium growth

[Ref.: #39775]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5618]	growth	45 °C
[Ref.: #39775]	growth	45 °C
[Ref.: #67770]	growth	45 °C

[Ref.: #5618]	Temperature range	thermophilic
[Ref.: #39775]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5618]	Sample type/isolated from	mixed fruit juice
[Ref.: #5618]	Geographic location (country and/or sea, region)	fruit juice imported into Japan from USA
[Ref.: #5618]	Country	USA
[Ref.: #5618]	Country ISO 3 Code	USA
[Ref.: #5618]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Spoiled mixed fruit juice
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Beverage
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681267 (>99% sequence identity) for Alicyclobacillus pomorum subclade from Microbeatlas

Aquatic Samples	2531
Soil Samples	7189
Animal Samples	755
Plant Samples	824
Total Samples	11299

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5618]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Alicyclobacillus pomorum gene for 16S rRNA	AB089840	1528	ENA	1111479 tax ID	*
[Ref.: #20218]	Alicyclobacillus pomorum gene for 16S rRNA, partial sequence, strain: NBRC 100861	AB681267	1470	ENA	1111479 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alicyclobacillus pomorum DSM 14955 DSM 14955	GCA_000472905	scaffold	GenBank	1111479 tax ID
[Ref.: #66792]	Alicyclobacillus pomorum DSM 14955	1111479.4	wgs	PATRIC	1111479 tax ID	*
[Ref.: #66792]	Alicyclobacillus pomorum DSM 14955	2513237116	draft	JGI IMG/M	1111479 tax ID	*

[Ref.: #67770]

GC-content

53.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5618]

Culture collection no.

DSM 14955, IAM 14988, JCM 21459, CIP 108162, NBRC 100861

[Ref.: #20218]

Associated Passport(s) in StrainInfo

368928, 368929

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alicyclobacillus pomorum sp. nov., a novel thermo-acidophilic, endospore-forming bacterium that does not possess omega-alicyclic fatty acids, and emended description of the genus Alicyclobacillus.	Goto K, Mochida K, Asahara M, Suzuki M, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.02546-0	2003	*

References

#5618

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14955

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39775 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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