Name: Pseudodesulfovibrio tunisiensis DSM 19275
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4164

Type strain:

Species: Pseudodesulfovibrio tunisiensis

Culture col. no.: DSM 19275, JCM 15076, NCIMB 14400, CCUG 55298, RB 22

Strain history: Z. Ben Ali Gam RB22.

NCBI tax ID(s): 1121465 (strain), 463192 (species)

SI-ID 408204

DSM 19275

Special Collections

Section

Pseudodesulfovibrio tunisiensis DSM 19275 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from exhaust water of oil refinery.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Pseudodesulfovibrio*
	Species	**Pseudodesulfovibrio tunisiensis**
	Full Scientific Name (LPSN)	Pseudodesulfovibrio tunisiensis (Ben Ali Gam et al. 2009) Waite et al. 2020

Synonym

Desulfovibrio tunisiensis

Information on morphological and physiological properties Morphology

[Ref.: #28900]	Gram stain	negative

[Ref.: #28900]	Cell length	1.75 µm

[Ref.: #28900]	Cell width	0.5 µm

[Ref.: #28900]	Cell shape	rod-shaped

[Ref.: #28900]	Motility	yes

[Ref.: #60521]

Incubation period

7 days

[Ref.: #28900]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7992]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #7992]

Culture medium growth

[Ref.: #7992]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7992]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7992]	growth	35 °C
[Ref.: #28900]	growth	15-45 °C
[Ref.: #28900]	optimum	37 °C
[Ref.: #60521]	growth	37 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #28900]			optimum	7
[Ref.: #28900]			growth	4.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7992]	Oxygen tolerance	anaerobe
[Ref.: #28900]	Oxygen tolerance	anaerobe
[Ref.: #60521]	Oxygen tolerance	anaerobe

[Ref.: #28900]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28900]		NaCl		growth	0-7	%
[Ref.: #28900]		NaCl		optimum	4	%

[Ref.: #28900]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28900]	glycerol ChEBI	+	carbon source
[Ref.: #28900]	lactate ChEBI	+	carbon source
[Ref.: #28900]	succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7992]	Sample type/isolated from	exhaust water of oil refinery
[Ref.: #7992]	Geographic location (country and/or sea, region)	Bizerte
[Ref.: #7992]	Country	Tunisia
[Ref.: #7992]	Country ISO 3 Code	TUN
[Ref.: #7992]	Continent	Africa

[Ref.: #60521]	Sample type/isolated from	Wastewater reffinery
[Ref.: #60521]	Sampling date	2007-02-15
[Ref.: #60521]	Country	Tunisia
[Ref.: #60521]	Country ISO 3 Code	TUN
[Ref.: #60521]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Exhaust water of a Tunisian oil refinery
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Engineered	#Waste	#Wastewater
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF577029 (>99% sequence identity) for Desulfovibrio tunisiensis subclade from Microbeatlas

Aquatic Samples	83
Soil Samples	4
Animal Samples	7
Plant Samples	7
Total Samples	101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7992]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7992]	Desulfovibrio tunisiensis strain RB22 16S ribosomal RNA gene, partial sequence	EF577029	1541	GenBank ENA	463192 tax ID

[Ref.: #7992]	GC-content	59.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #28900]	GC-content	59.6 mol%

Availability in culture collections External links

[Ref.: #7992]

Culture collection no.

DSM 19275, JCM 15076, NCIMB 14400, CCUG 55298, RB 22

[Ref.: #73665]	SI-ID 408204	*
[Ref.: #73666]	SI-ID 408456	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paradesulfovibrio onnuriensis gen. nov., sp. nov., a chemolithoautotrophic sulfate-reducing bacterium isolated from the Onnuri vent field of the Indian Ocean and reclassification of Desulfovibrio senegalensis as Paradesulfovibrio senegalensis comb. nov.	Kim YJ, Yang JA, Lim JK, Park MJ, Yang SH, Lee HS, Kang SG, Lee JH, Kwon KK	J Microbiol	10.1007/s12275-020-9376-0	2020	*
Phylogeny	Desulfovibrio tunisiensis sp. nov., a novel weakly halotolerant, sulfate-reducing bacterium isolated from exhaust water of a Tunisian oil refinery.	Ben Ali Gam Z, Oueslati R, Abdelkafi S, Casalot L, Tholozan JL, Labat M	Int J Syst Evol Microbiol	10.1099/ijs.0.000943-0	2009	*

References

#7992

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19275

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28900

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25340 (see below)

#60521 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55298
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73665

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408204.1 )

#73666

#25340

IJSEM 1059 2009 ( DOI 10.1099/ijs.0.000943-0 , PubMed 19406793 )

* These data were automatically processed and therefore are not curated

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