Strain identifier

BacDive ID: 4163

Type strain: No

Species: Nitratidesulfovibrio vulgaris

Strain Designation: Miyazaki F

Culture col. no.: DSM 19637, JCM 14930

Strain history: H. Akutsu <-- S. Iwasaki strain Miyazaki F.

NCBI tax ID(s): 881 (species)

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Nitratidesulfovibrio vulgaris Miyazaki F is an anaerobe, mesophilic bacterium that was isolated from degraded paddy field.

  1. anaerobe
  2. mesophilic
  3. Bacteria
  4. genome sequence
  • Information on culture and growth conditions Culture and growth conditionsarrow_down
  • [Ref.: #8227] Culture medium
    DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
    [Ref.: #8227] Culture medium growth Yes
    [Ref.: #8227] Culture medium link Medium recipe at MediaDive MediaDive
    [Ref.: #8227] Culture medium composition expand / minimize
    Temperatures Kind of temperaturearrow to sort Temperaturearrow to sort
    [Ref.: #8227] growth 37  °C
    [Ref.: #67770] growth 37  °C
     
    [Ref.: #8227] Temperature range mesophilic
    [Ref.: #67770] Temperature range mesophilic
  • Availability in culture collections External linksarrow_down
  • [Ref.: #8227] Culture collection no. DSM 19637, JCM 14930
    [Ref.: #73664] *
    Literature: Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries.
    Topicarrow to sort Titlearrow to sort Authorsarrow to sort Journalarrow to sort DOIarrow to sort Yeararrow to sort
    Enzymology Towards cryogenic neutron crystallography on the reduced form of [NiFe]-hydrogenase. Hiromoto T, Nishikawa K, Inoue S, Matsuura H, Hirano Y, Kurihara K, Kusaka K, Cuneo M, Coates L, Tamada T, Higuchi Y Acta Crystallogr D Struct Biol 10.1107/S2059798320011365 2020 *
    Enzymology H2 Kinetic Isotope Fractionation Superimposed by Equilibrium Isotope Fractionation During Hydrogenase Activity of D. vulgaris Strain Miyazaki. Loffler M, Kummel S, Vogt C, Richnow HH Front Microbiol 10.3389/fmicb.2019.01545 2019 *
    Enzymology New assay method based on Raman spectroscopy for enzymes reacting with gaseous substrates. Kawahara-Nakagawa Y, Nishikawa K, Nakashima S, Inoue S, Ohta T, Ogura T, Shigeta Y, Fukutani K, Yagi T, Higuchi Y Protein Sci 10.1002/pro.3569 2019 *
    Enzymology Reactivation of standard [NiFe]-hydrogenase and bioelectrochemical catalysis of proton reduction and hydrogen oxidation in a mediated-electron-transfer system. Shiraiwa S, So K, Sugimoto Y, Kitazumi Y, Shirai O, Nishikawa K, Higuchi Y, Kano K Bioelectrochemistry 10.1016/j.bioelechem.2018.05.003 2018 *
    Enzymology Electrostatic roles in electron transfer from [NiFe] hydrogenase to cytochrome c3 from Desulfovibrio vulgaris Miyazaki F. Sugimoto Y, Kitazumi Y, Shirai O, Nishikawa K, Higuchi Y, Yamamoto M, Kano K Biochim Biophys Acta Proteins Proteom 10.1016/j.bbapap.2017.02.009 2017 *
    Enzymology Photoactivation of the Ni-SIr state to the Ni-SIa state in [NiFe] hydrogenase: FT-IR study on the light reactivity of the ready Ni-SIr state and as-isolated enzyme revisited. Tai H, Xu L, Inoue S, Nishikawa K, Higuchi Y, Hirota S Phys Chem Chem Phys 10.1039/c6cp04628b 2016 *
    Enzymology Light-Driven Hydrogen Production by Hydrogenases and a Ru-Complex inside a Nanoporous Glass Plate under Aerobic External Conditions. Noji T, Kondo M, Jin T, Yazawa T, Osuka H, Higuchi Y, Nango M, Itoh S, Dewa T J Phys Chem Lett 10.1021/jz5008164 2014 *
    Enzymology Hydride bridge in [NiFe]-hydrogenase observed by nuclear resonance vibrational spectroscopy. Ogata H, Kramer T, Wang H, Schilter D, Pelmenschikov V, van Gastel M, Neese F, Rauchfuss TB, Gee LB, Scott AD, Yoda Y, Tanaka Y, Lubitz W, Cramer SP Nat Commun 10.1038/ncomms8890 2015 *
    Enzymology FT-IR Characterization of the Light-Induced Ni-L2 and Ni-L3 States of [NiFe] Hydrogenase from Desulfovibrio vulgaris Miyazaki F. Tai H, Nishikawa K, Inoue S, Higuchi Y, Hirota S J Phys Chem B 10.1021/acs.jpcb.5b03075 2015 *
    Metabolism Surface display of highly-stable Desulfovibrio vulgaris carbonic anhydrase on polyester beads for CO2 capture. Hooks DO, Rehm BH Biotechnol Lett 10.1007/s10529-015-1803-7 2015 *

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