Name: Desulfosarcina cetonica 480
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3994

Type strain:

Species: Desulfosarcina cetonica

Strain Designation: 480

Culture col. no.: DSM 7267, JCM 12296, VKM B-1975

Strain history: DSM 7267 <-- A. S. Galushko 480.

NCBI tax ID(s): 1294021 (strain), 90730 (species)

SI-ID 48395

DSM 7267, VKM B-1975, JCM 12296

Section

Desulfosarcina cetonica 480 is an anaerobe, mesophilic, motile bacterium that was isolated from oil recovery water.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobacteraceae*
	Genus	*Desulfosarcina*
	Species	**Desulfosarcina cetonica**
	Full Scientific Name (LPSN)	Desulfosarcina cetonica corrig. (Galushko and Rozanova 1994) Kuever et al. 2006

	Synonym	Desulfosarcina cetonicum
	Synonym	Desulfobacterium cetonicum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.379

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3084]

Culture medium

DESULFOBACTERIUM CETONICUM MEDIUM (DSMZ Medium 612)

[Ref.: #3084]

Culture medium growth

[Ref.: #3084]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3084]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3084]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #3084]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3084]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.647

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.789

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3084]	Sample type/isolated from	oil recovery water
[Ref.: #3084]	Geographic location (country and/or sea, region)	Apsheron peninsula, Lokbatanskii deposit
[Ref.: #3084]	Country	Azerbaijan
[Ref.: #3084]	Country ISO 3 Code	AZE
[Ref.: #3084]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Flooded oil stratum of the Apsheron peninsula
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ237603 (>99% sequence identity) for Desulfosarcina cetonica from Microbeatlas

Aquatic Samples	283
Soil Samples	21
Animal Samples
Plant Samples	1
Total Samples	305

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3084]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3084]	Desulfobacterium cetonicum 16S rRNA gene, partial, strain DSM 7267	AJ237603	1515	ENA	90730 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Desulfosarcina cetonica JCM 12296	GCA_001311845	contig	GenBank	1294021 tax ID
[Ref.: #66792]	Desulfosarcina cetonica JCM 12296	1294021.26	wgs	PATRIC	1294021 tax ID	*
[Ref.: #66792]	Desulfosarcina cetonica JCM 12296	2703718901	draft	JGI IMG/M	1294021 tax ID	*

[Ref.: #3084]	GC-content	59.0 mol%
[Ref.: #67770]	GC-content	59 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfosarcina cetonica JCM 12296 PATRIC: 1294021.26
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfosarcina cetonica JCM 12296 PATRIC: 1294021.26
[Ref.: #69480]	motile	yes	88.205	no
[Ref.: #69480]	gram-positive	no	98.739	no
[Ref.: #69480]	anaerobic	yes	96.731	yes
[Ref.: #69480]	aerobic	no	93.274	yes
[Ref.: #69480]	halophile	no	84.659	no
[Ref.: #69480]	spore-forming	no	89.733	no
[Ref.: #69480]	glucose-util	yes	56.692	no
[Ref.: #69480]	flagellated	no	65.852	no
[Ref.: #69480]	thermophile	no	99.035	no
[Ref.: #69480]	glucose-ferment	no	83.033	no

Availability in culture collections External links

[Ref.: #3084]

Culture collection no.

DSM 7267, JCM 12296, VKM B-1975

[Ref.: #73499]

SI-ID 48395

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay.	Watanabe M, Higashioka Y, Kojima H, Fukui M	Syst Appl Microbiol	10.1016/j.syapm.2020.126109	2020	*
Phylogeny	Desulfatitalea tepidiphila gen. nov., sp. nov., a sulfate-reducing bacterium isolated from tidal flat sediment.	Higashioka Y, Kojima H, Watanabe M, Fukui M	Int J Syst Evol Microbiol	10.1099/ijs.0.043356-0	2012	*

References

#3084

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7267

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73499

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48395.1 )

* These data were automatically processed and therefore are not curated

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Desulfosarcina cetonica JCM 12296

Desulfosarcina cetonica JCM 12296

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