Desulfosarcina cetonica (DSM 7267, JCM 12296, VKM B-1975)

Name: Desulfosarcina cetonica (DSM 7267, JCM 12296, VKM B-1975)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3994

Type strain

Strain Designation 480

Culture col. no. DSM 7267 JCM 12296 VKM B-1975 480

NCBI tax ID(s) 1294021 90730

Special Collections DSMZ JCM

History DSMZ <- A. S. Galushko, Institute of Microbiology, Russ. Academy of Sciences, Moscow, Russia; 480 JCM <-- DSM 7267 <-- A. S. Galushko 480.

Links

Desulfosarcina cetonica 480 is an anaerobe bacterium that was isolated from oil recovery water.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 48395

DSM 7267,VKM B-1975,JCM 12296

@ref 20215

Last LPSN update 2026-05-29 08:25:50

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfobacteria

Order Desulfobacterales

Family Desulfosarcinaceae

Genus Desulfosarcina

Species Desulfosarcina cetonica

Full scientific name Desulfosarcina cetonica corrig. (Galushko and Rozanova 1994) Kuever et al. 2006

Synonyms (2)

Desulfosarcina cetonicum
Desulfobacterium cetonicum

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.5
125439	negative	97.489

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3084	DESULFOSARCINA CETONICA MEDIUM (DSMZ Medium 612)		Medium recipe at MediaDive	Name: DESULFOSARCINA CETONICA MEDIUM (DSMZ Medium 612) Composition: NaCl 9.98003 g/l Na2SO4 2.79441 g/l MgCl2 x 6 H2O 1.69661 g/l Na-butyrate 1.1976 g/l Na2CO3 0.998004 g/l KH2PO4 0.698603 g/l NH4Cl 0.299401 g/l Na2S x 9 H2O 0.299401 g/l CaCl2 x 2 H2O 0.0499002 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3084	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3084	anaerobe
125439	obligate anaerobe	92.011

Spore formation

@ref	Spore formation	Confidence
125439		99.33

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3084	oil recovery water	Apsheron peninsula, Lokbatanskii deposit	Azerbaijan	AZE	Asia
67770	Flooded oil stratum of the Apsheron peninsula

Taxonmaps

69479

Global distribution of 16S sequence AJ237603 (>99% sequence identity) for Desulfosarcina cetonica from Microbeatlas

Aquatic Samples	283
Soil Samples	21
Animal Samples	0
Plant Samples	1
Total Samples	305

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3084	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM131184v1 assembly for Desulfosarcina cetonica JCM 12296	contig	GCA_001311845	1294021.26	2703718901	1294021	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3084	Desulfobacterium cetonicum 16S rRNA gene, partial, strain DSM 7267	AJ237603	1515		90730

GC content

@ref	GC-content (mol%)	Method
3084	59.0
67770	59	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM131184v1 assembly for Desulfosarcina cetonica JCM 12296
NCBI: GCA_001311845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	92.01	no
125439	gram_stain	BacteriaNetⓘ	negative	97.49	no
125439	motility	BacteriaNetⓘ	no	67.43	no
125439	spore_formation	BacteriaNetⓘ	no	99.33	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfosarcina cetonica JCM 12296
PATRIC: 1294021.26

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.50	no
125438	anaerobic	anaerobicⓘ	yes	72.13	yes
125438	spore-forming	spore-formingⓘ	no	78.31	no
125438	aerobic	aerobicⓘ	no	76.63	no
125438	thermophilic	thermophileⓘ	no	86.83	yes
125438	flagellated	motile2+ⓘ	yes	67.95	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Activation of short-chain ketones and isopropanol in sulfate-reducing bacteria.	Frey J, Kassner S, Spiteller D, Mergelsberg M, Boll M, Schleheck D, Schink B.	BMC Microbiol	10.1186/s12866-021-02112-6	2021
Genetics	Integrated Multi-omics Investigations Reveal the Key Role of Synergistic Microbial Networks in Removing Plasticizer Di-(2-Ethylhexyl) Phthalate from Estuarine Sediments.	Wei ST, Chen YL, Wu YW, Wu TY, Lai YL, Wang PH, Ismail W, Lee TH, Chiang YR.	mSystems	10.1128/msystems.00358-21	2021
Phylogeny	Evidence for benzylsuccinate synthase subtypes obtained by using stable isotope tools.	Kummel S, Kuntze K, Vogt C, Boll M, Heider J, Richnow HH.	J Bacteriol	10.1128/jb.00477-13	2013
Genetics	Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.	Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, Takashima M, Manabe RI, Cadez N, Libkind D, Rosa CA, DeVirgilio J, Hulfachor AB, Groenewald M, Kurtzman CP, Hittinger CT, Rokas A.	Cell	10.1016/j.cell.2018.10.023	2018
Metabolism	The class II benzoyl-coenzyme A reductase complex from the sulfate-reducing Desulfosarcina cetonica.	Anselmann SEL, Loffler C, Stark HJ, Jehmlich N, von Bergen M, Bruls T, Boll M.	Environ Microbiol	10.1111/1462-2920.14784	2019
Metabolism	Enzymes involved in phthalate degradation in sulphate-reducing bacteria.	Geiger RA, Junghare M, Mergelsberg M, Ebenau-Jehle C, Jesenofsky VJ, Jehmlich N, von Bergen M, Schink B, Boll M.	Environ Microbiol	10.1111/1462-2920.14681	2019
	Anaerobic degradation of polycyclic aromatic hydrocarbons.	Heker I, Samak NA, Kong Y, Meckenstock RU.	Appl Environ Microbiol	10.1128/aem.02268-24	2025
	Two Marine Desulfotomaculum spp. of Different Origin are Capable of Utilizing Acetone and Higher Ketones.	Frey J, Kassner S, Schink B.	Curr Microbiol	10.1007/s00284-021-02441-9	2021
	Isophthalate:coenzyme A ligase initiates anaerobic degradation of xenobiotic isophthalate.	Junghare M, Frey J, Naji KM, Spiteller D, Vaaje-Kolstad G, Schink B.	BMC Microbiol	10.1186/s12866-022-02630-x	2022
Enzymology	Naphthalene Carboxylation in the Sulfate-Reducing Enrichment Culture N47 Is Proposed to Proceed via 1,3-Dipolar Cycloaddition to the Cofactor Prenylated Flavin Mononucleotide.	Heker I, Haberhauer G, Meckenstock RU.	Appl Environ Microbiol	10.1128/aem.01927-22	2023
Metabolism	New perspectives on butyrate assimilation in Rhodospirillum rubrum S1H under photoheterotrophic conditions.	De Meur Q, Deutschbauer A, Koch M, Bayon-Vicente G, Cabecas Segura P, Wattiez R, Leroy B.	BMC Microbiol	10.1186/s12866-020-01814-7	2020
Metabolism	Isolation and characterization of novel sulfate-reducing bacterium capable of anaerobic degradation of p-xylene.	Higashioka Y, Kojima H, Fukui M.	Microbes Environ	10.1264/jsme2.me11357	2012
	Pif1 Helicases and the Evidence for a Prokaryotic Origin of Helitrons.	Heringer P, Kuhn GCS.	Mol Biol Evol	10.1093/molbev/msab334	2022
	Taxonomic and functional characterization of a microbial community from a volcanic englacial ecosystem in Deception Island, Antarctica.	Martinez-Alonso E, Pena-Perez S, Serrano S, Garcia-Lopez E, Alcazar A, Cid C.	Sci Rep	10.1038/s41598-019-47994-9	2019
	Proteomics unveil a central role for peroxisomes in butyrate assimilation of the heterotrophic Chlorophyte alga Polytomella sp.	Lacroux J, Atteia A, Brugiere S, Coute Y, Vallon O, Steyer JP, van Lis R.	Front Microbiol	10.3389/fmicb.2022.1029828	2022
	Analysis of the Complete Genome of the Alkaliphilic and Phototrophic Firmicute Heliorestis convoluta Strain HH^T.	Dewey ED, Stokes LM, Burchell BM, Shaffer KN, Huntington AM, Baker JM, Nadendla S, Giglio MG, Bender KS, Touchman JW, Blankenship RE, Madigan MT, Sattley WM.	Microorganisms	10.3390/microorganisms8030313	2020
Enzymology	Promiscuous Defluorinating Enoyl-CoA Hydratases/Hydrolases Allow for Complete Anaerobic Degradation of 2-Fluorobenzoate.	Tiedt O, Mergelsberg M, Eisenreich W, Boll M.	Front Microbiol	10.3389/fmicb.2017.02579	2017
	Physiological and comparative proteomic characterization of Desulfolithobacter dissulfuricans gen. nov., sp. nov., a novel mesophilic, sulfur-disproportionating chemolithoautotroph from a deep-sea hydrothermal vent.	Hashimoto Y, Shimamura S, Tame A, Sawayama S, Miyazaki J, Takai K, Nakagawa S.	Front Microbiol	10.3389/fmicb.2022.1042116	2022
Phylogeny	Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay.	Watanabe M, Higashioka Y, Kojima H, Fukui M	Syst Appl Microbiol	10.1016/j.syapm.2020.126109	2020
Phylogeny	Desulfatitalea tepidiphila gen. nov., sp. nov., a sulfate-reducing bacterium isolated from tidal flat sediment.	Higashioka Y, Kojima H, Watanabe M, Fukui M	Int J Syst Evol Microbiol	10.1099/ijs.0.043356-0	2012

References

#3084	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7267
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Desulfosarcina cetonica (DSM 7267, JCM 12296, VKM B-1975)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001311845

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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