Name: Desulfosarcina cetonica 480
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3994

Type strain:

Species: Desulfosarcina cetonica

Strain Designation: 480

Culture col. no.: DSM 7267, JCM 12296, VKM B-1975

Strain history: DSM 7267 <-- A. S. Galushko 480.

NCBI tax ID(s): 1294021 (strain), 90730 (species)

SI-ID 48395

DSM 7267, VKM B-1975, JCM 12296

Special Collections

DSMZ
JCM

Section

Desulfosarcina cetonica 480 is an anaerobe, Gram-negative bacterium that was isolated from oil recovery water.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobacteraceae*
	Genus	*Desulfosarcina*
	Species	**Desulfosarcina cetonica**
	Full Scientific Name (LPSN)	Desulfosarcina cetonica corrig. (Galushko and Rozanova 1994) Kuever et al. 2006

	Synonym	Desulfosarcina cetonicum
	Synonym	Desulfobacterium cetonicum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %94.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3084]

Culture medium

DESULFOBACTERIUM CETONICUM MEDIUM (DSMZ Medium 612)

[Ref.: #3084]

Culture medium growth

[Ref.: #3084]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3084]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3084]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3084]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3084]	Sample type/isolated from	oil recovery water
[Ref.: #3084]	Geographic location (country and/or sea, region)	Apsheron peninsula, Lokbatanskii deposit
[Ref.: #3084]	Country	Azerbaijan
[Ref.: #3084]	Country ISO 3 Code	AZE
[Ref.: #3084]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Flooded oil stratum of the Apsheron peninsula
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ237603 (>99% sequence identity) for Desulfosarcina cetonica from Microbeatlas

Aquatic Samples	283
Soil Samples	21
Animal Samples
Plant Samples	1
Total Samples	305

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3084]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3084]	Desulfobacterium cetonicum 16S rRNA gene, partial, strain DSM 7267	AJ237603	1515	GenBank ENA	90730 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Desulfosarcina cetonica JCM 12296	GCA_001311845	contig	GenBank ENA	1294021 tax ID
[Ref.: #66792]	Desulfosarcina cetonica JCM 12296	1294021.26	wgs	PATRIC	1294021 tax ID	*
[Ref.: #66792]	Desulfosarcina cetonica JCM 12296	2703718901	draft	JGI IMG/M	1294021 tax ID	*

[Ref.: #3084]	GC-content	59.0 mol%
[Ref.: #67770]	GC-content	59 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfosarcina cetonica JCM 12296 PATRIC: 1294021.26
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfosarcina cetonica JCM 12296 PATRIC: 1294021.26
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	72.131	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	78.31	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	76.633	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	86.825	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.95	no

Availability in culture collections External links

[Ref.: #3084]

Culture collection no.

DSM 7267, JCM 12296, VKM B-1975

[Ref.: #73499]

SI-ID 48395

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay.	Watanabe M, Higashioka Y, Kojima H, Fukui M	Syst Appl Microbiol	10.1016/j.syapm.2020.126109	2020	*
Phylogeny	Desulfatitalea tepidiphila gen. nov., sp. nov., a sulfate-reducing bacterium isolated from tidal flat sediment.	Higashioka Y, Kojima H, Watanabe M, Fukui M	Int J Syst Evol Microbiol	10.1099/ijs.0.043356-0	2012	*

References

#3084

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7267

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#73499

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48395.1 )

* These data were automatically processed and therefore are not curated

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Desulfosarcina cetonica JCM 12296

Desulfosarcina cetonica JCM 12296

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