Name: Desulfosarcina ovata oXyS1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 3995

Type strain:

Species: Desulfosarcina ovata

Strain Designation: oXyS1

Culture col. no.: DSM 13228, JCM 12297

Strain history: DSM 13228 <-- K. Zengler oXyS1.

NCBI tax ID(s): 83564 (species)

SI-ID 49440

DSM 13228, JCM 12297

Section

Desulfosarcina ovata oXyS1 is an anaerobe, mesophilic bacterium that was isolated from seawater in an oil tank.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobacteraceae*
	Genus	*Desulfosarcina*
	Species	**Desulfosarcina ovata**
	Full Scientific Name (LPSN)	Desulfosarcina ovata Kuever et al. 2006

Synonym

"Desulfosarcina ovata"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4971]

Culture medium

DESULFOBACTERIUM MEDIUM (DSMZ Medium 383)

[Ref.: #4971]

Culture medium growth

[Ref.: #4971]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4971]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4971]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #4971]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4971]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4971]	Sample type/isolated from	seawater in an oil tank
[Ref.: #4971]	Geographic location (country and/or sea, region)	Wilhelmshaven
[Ref.: #4971]	Country	Germany
[Ref.: #4971]	Country ISO 3 Code	DEU
[Ref.: #4971]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Water phase of a North Sea oil tank
[Ref.: #67770]	Geographic location (country and/or sea, region)	Wilhelmshaven
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Container (Reservoir)
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y17286 (>99% sequence identity) for Desulfosarcina ovata from Microbeatlas

Aquatic Samples	62
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	63

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4971]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4971]	Desulfosarcina ovata partial 16S rRNA gene, type strain oXyS1T	Y17286	1508	ENA	83564 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfosarcina ovata subsp. ovata oXyS1	GCA_009689005	complete	GenBank	2752305 tax ID	*

[Ref.: #4971]

GC-content

51 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfosarcina ovata subsp. ovata oXyS1 NCBI: GCA_009689005.1
[Ref.: #69480]	motile	yes	84.695	no
[Ref.: #69480]	flagellated	no	73.174	no
[Ref.: #69480]	gram-positive	no	99.042	no
[Ref.: #69480]	anaerobic	yes	98.26	yes
[Ref.: #69480]	aerobic	no	96.593	yes
[Ref.: #69480]	halophile	no	84.61	no
[Ref.: #69480]	spore-forming	no	92.363	no
[Ref.: #69480]	glucose-util	yes	55.726	no
[Ref.: #69480]	thermophile	no	96.987	no
[Ref.: #69480]	glucose-ferment	no	78.728	no

Availability in culture collections External links

[Ref.: #4971]

Culture collection no.

DSM 13228, JCM 12297

[Ref.: #73500]

SI-ID 49440

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay.	Watanabe M, Higashioka Y, Kojima H, Fukui M	Syst Appl Microbiol	10.1016/j.syapm.2020.126109	2020	*

References

#4971

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13228

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73500

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49440.1 )

* These data were automatically processed and therefore are not curated

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Desulfosarcina ovata subsp. ovata oXyS1

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