Name: Desulfosarcina ovata oXyS1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 3995

Type strain:

Species: Desulfosarcina ovata

Strain Designation: oXyS1

Culture col. no.: DSM 13228, JCM 12297

Strain history: DSM 13228 <-- K. Zengler oXyS1.

NCBI tax ID(s): 83564 (species)

SI-ID 49440

DSM 13228, JCM 12297

Special Collections

DSMZ
JCM

Section

Desulfosarcina ovata oXyS1 is an anaerobe, Gram-negative bacterium that was isolated from seawater in an oil tank.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobacteraceae*
	Genus	*Desulfosarcina*
	Species	**Desulfosarcina ovata**
	Full Scientific Name (LPSN)	Desulfosarcina ovata Kuever et al. 2006

Synonym

"Desulfosarcina ovata"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %94.669

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4971]

Culture medium

DESULFOBACTERIUM MEDIUM (DSMZ Medium 383)

[Ref.: #4971]

Culture medium growth

[Ref.: #4971]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4971]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4971]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4971]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4971]	Sample type/isolated from	seawater in an oil tank
[Ref.: #4971]	Geographic location (country and/or sea, region)	Wilhelmshaven
[Ref.: #4971]	Country	Germany
[Ref.: #4971]	Country ISO 3 Code	DEU
[Ref.: #4971]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Water phase of a North Sea oil tank
[Ref.: #67770]	Geographic location (country and/or sea, region)	Wilhelmshaven
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Container (Reservoir)
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y17286 (>99% sequence identity) for Desulfosarcina ovata from Microbeatlas

Aquatic Samples	62
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	63

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4971]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4971]	Desulfosarcina ovata partial 16S rRNA gene, type strain oXyS1T	Y17286	1508	GenBank ENA	83564 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfosarcina ovata subsp. ovata oXyS1	GCA_009689005	complete	GenBank ENA	2752305 tax ID	*

[Ref.: #4971]

GC-content

51 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfosarcina ovata subsp. ovata oXyS1 NCBI: GCA_009689005.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.669	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	76.332	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	80.87	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	78.524	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	85.738	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.11	no

Availability in culture collections External links

[Ref.: #4971]

Culture collection no.

DSM 13228, JCM 12297

[Ref.: #73500]

SI-ID 49440

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay.	Watanabe M, Higashioka Y, Kojima H, Fukui M	Syst Appl Microbiol	10.1016/j.syapm.2020.126109	2020	*

References

#4971

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13228

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#73500

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49440.1 )

* These data were automatically processed and therefore are not curated

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Desulfosarcina ovata subsp. ovata oXyS1

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