Strain identifier
BacDive ID: 3994
Type strain: 
Species: Desulfosarcina cetonica
Strain Designation: 480
Strain history: DSM 7267 <-- A. S. Galushko 480.
NCBI tax ID(s): 1294021 (strain), 90730 (species)
version 9.1 (current version)
General
@ref: 3084
BacDive-ID: 3994
DSM-Number: 7267
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative
description: Desulfosarcina cetonica 480 is an anaerobe, Gram-negative bacterium that was isolated from oil recovery water.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1294021 | strain |
| 90730 | species |
strain history
| @ref | history |
|---|---|
| 3084 | <- A. S. Galushko, Institute of Microbiology, Russ. Academy of Sciences, Moscow, Russia; 480 |
| 67770 | DSM 7267 <-- A. S. Galushko 480. |
doi: 10.13145/bacdive3994.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobacteraceae
- genus: Desulfosarcina
- species: Desulfosarcina cetonica
- full scientific name: Desulfosarcina cetonica corrig. (Galushko and Rozanova 1994) Kuever et al. 2006
synonyms
@ref synonym 20215 Desulfosarcina cetonicum 20215 Desulfobacterium cetonicum
@ref: 3084
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfosarcina
species: Desulfosarcina cetonica
full scientific name: Desulfosarcina cetonica (Galushko and Rozanova 1994) Kuever et al. 2006
strain designation: 480
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 94.5
Culture and growth conditions
culture medium
- @ref: 3084
- name: DESULFOBACTERIUM CETONICUM MEDIUM (DSMZ Medium 612)
- growth: yes
- link: https://mediadive.dsmz.de/medium/612
- composition: Name: DESULFOSARCINA CETONICA MEDIUM (DSMZ Medium 612) Composition: NaCl 9.98003 g/l Na2SO4 2.79441 g/l MgCl2 x 6 H2O 1.69661 g/l Na-butyrate 1.1976 g/l Na2CO3 0.998004 g/l KH2PO4 0.698603 g/l NH4Cl 0.299401 g/l Na2S x 9 H2O 0.299401 g/l CaCl2 x 2 H2O 0.0499002 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 3084 | positive | growth | 30 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
- @ref: 3084
- oxygen tolerance: anaerobe
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 3084 | oil recovery water | Apsheron peninsula, Lokbatanskii deposit | Azerbaijan | AZE | Asia |
| 67770 | Flooded oil stratum of the Apsheron peninsula |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_3715.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_127;96_1915;97_2303;98_2839;99_3715&stattab=map
- Last taxonomy: Desulfosarcina cetonica
- 16S sequence: AJ237603
- Sequence Identity:
- Total samples: 305
- soil counts: 21
- aquatic counts: 283
- plant counts: 1
Safety information
risk assessment
- @ref: 3084
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3084
- description: Desulfobacterium cetonicum 16S rRNA gene, partial, strain DSM 7267
- accession: AJ237603
- length: 1515
- database: nuccore
- NCBI tax ID: 90730
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfosarcina cetonica JCM 12296 | 1294021.26 | wgs | patric | 1294021 |
| 66792 | Desulfosarcina cetonica JCM 12296 | 2703718901 | draft | img | 1294021 |
| 67770 | Desulfosarcina cetonica JCM 12296 | GCA_001311845 | contig | ncbi | 1294021 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 3084 | 59.0 | |
| 67770 | 59 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 94.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 72.131 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 78.31 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 76.633 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 86.825 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 67.95 | no |
External links
@ref: 3084
culture collection no.: DSM 7267, JCM 12296, VKM B-1975
straininfo link
- @ref: 73499
- straininfo: 48395
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22581901 | Desulfatitalea tepidiphila gen. nov., sp. nov., a sulfate-reducing bacterium isolated from tidal flat sediment. | Higashioka Y, Kojima H, Watanabe M, Fukui M | Int J Syst Evol Microbiol | 10.1099/ijs.0.043356-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/analysis, Genes, Bacterial, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification, Water Microbiology | Enzymology |
| Phylogeny | 32847784 | Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay. | Watanabe M, Higashioka Y, Kojima H, Fukui M | Syst Appl Microbiol | 10.1016/j.syapm.2020.126109 | 2020 | Bacterial Typing Techniques, Base Composition, *Bays, DNA, Bacterial/chemistry/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification/*metabolism, Genes, Bacterial, Genes, rRNA, Genome, Bacterial, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Nucleic Acid Hybridization, Oxidation-Reduction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfates/*metabolism, Temperature, Tokyo, Toluene/*metabolism | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3084 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7267) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7267 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 73499 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48395.1 | StrainInfo: A central database for resolving microbial strain identifiers |