Deinococcus aerolatus (DSM 24781, JCM 15442, KACC 12745)

Name: Deinococcus aerolatus (DSM 24781, JCM 15442, KACC 12745)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3897

Type strain

Strain Designation 5516T-9

Culture col. no. DSM 24781 JCM 15442 KACC 12745 5516T-9 CIP 110188

NCBI tax ID(s) 522487

Special Collections DSMZ JCM Literature strains CIP

Links

Deinococcus aerolatus 5516T-9 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from air sample.

Gram-positive coccus-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 370167

JCM 15442,KACC 12745,DSM 24781,CIP 110188

@ref 20215

Last LPSN update 2025-12-16 09:47:40

Domain Thermotogati

Phylum Deinococcota

Class Deinococci

Order Deinococcales

Family Deinococcaceae

Genus Deinococcus

Species Deinococcus aerolatus

Full scientific name Deinococcus aerolatus Yoo et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Motility
29569	positive	1.45 µm	coccus-shaped
116073	positive		coccus-shaped

Pigmentation

29569

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17769	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
41026	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
116073	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17769	positive	growth	28	mesophilic
29569	positive	growth	05-40
29569	positive	optimum	30	mesophilic
41026	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29569	positive	optimum	7
29569	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29569	aerobe
125439	obligate aerobe	96.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29569	NaCl	positive	growth	0-1 %

Observation

67770

Observationquinones: MK-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29569	17128 ChEBI	adipate	+	carbon source
29569	4853 ChEBI	esculin	+	hydrolysis
29569	17234 ChEBI	glucose	+	carbon source
29569	27570 ChEBI	histidine	+	carbon source
29569	17306 ChEBI	maltose	+	carbon source
29569	29864 ChEBI	mannitol	+	carbon source
29569	37684 ChEBI	mannose	+	carbon source
29569	28053 ChEBI	melibiose	+	carbon source
116073	17632 ChEBI	nitrate	-	reduction
116073	16301 ChEBI	nitrite	-	reduction
29569	26271 ChEBI	proline	+	carbon source
29569	17814 ChEBI	salicin	+	carbon source
29569	17822 ChEBI	serine	+	carbon source
29569	30911 ChEBI	sorbitol	+	carbon source
29569	17992 ChEBI	sucrose	+	carbon source
29569	31011 ChEBI	valerate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116073	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29569	catalase	+	1.11.1.6
116073	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
29569	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116073	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116073	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116073	-	+	+	+	-	+	+	-	-	-	+	+	-	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Air

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17769	air sample	Taean region	Republic of Korea	KOR	Asia
67770	Air sample from Taean region		Republic of Korea	KOR	Asia
116073	Environment, Air sample	Taean region	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU622978 (>99% sequence identity) for Deinococcus aerolatus subclade from Microbeatlas

Aquatic Samples	152
Soil Samples	142
Animal Samples	905
Plant Samples	34
Total Samples	1233

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17769	1	Risk group (German classification) According to TRBA 466
116073	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464705v1 assembly for Deinococcus aerolatus JCM 15442	scaffold	GCA_014647055	522487.3	2995819605	522487	63.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17769	Deinococcus aerolatus strain 5516T-9 16S ribosomal RNA gene, partial sequence	EU622978	1394		522487
124043	Deinococcus aerolatus strain JCM 15442 16S ribosomal RNA gene, partial sequence.	MT760366	1321		522487

GC content

@ref	GC-content (mol%)	Method
17769	61.0	high performance liquid chromatography (HPLC)
29569	61
67770	61	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Deinococcus aerolatus JCM 15442
NCBI: GCA_014647055

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	89.60	no
125439	motility	BacteriaNetⓘ	yes	54.70	no
125439	gram_stain	BacteriaNetⓘ	negative	89.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Deinococcus aerolatus JCM 15442
NCBI: GCA_014647055.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	54.08	no
125438	anaerobic	anaerobicⓘ	no	93.18	no
125438	aerobic	aerobicⓘ	yes	81.20	yes
125438	spore-forming	spore-formingⓘ	no	75.30	no
125438	thermophilic	thermophileⓘ	no	83.85	yes
125438	flagellated	motile2+ⓘ	no	71.80	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Deinococcus swuensis sp. nov., a gamma-radiation-resistant bacterium isolated from soil.	Lee JJ, Lee HJ, Jang GS, Yu JM, Cha JY, Kim SJ, Lee EB, Kim MK	J Microbiol	10.1007/s12275-013-3023-y	2013
Phylogeny	Deinococcus humi sp. nov., isolated from soil.	Srinivasan S, Lee JJ, Lim S, Joe M, Kim MK	Int J Syst Evol Microbiol	10.1099/ijs.0.037234-0	2012
Phylogeny	Deinococcus aerolatus sp. nov. and Deinococcus aerophilus sp. nov., isolated from air samples.	Yoo SH, Weon HY, Kim SJ, Kim YS, Kim BY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.016030-0	2009

References

#17769	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24781
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25964	IJSEM 1191 2010 ( DOI 10.1099/ijs.0.016030-0 , PubMed 19667390 )
#29569	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25964
#41026	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116073	Collection of Institut Pasteur ; Curators of the CIP; CIP 110188
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Deinococcus aerolatus (DSM 24781, JCM 15442, KACC 12745)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014647055

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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